Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.8e-244 848.2 438 100.0
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 4.8e-228 794.3 487 86.4
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.2e-226 789.6 439 92.9
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 2.0e-226 788.9 443 92.3
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 3.7e-212 741.5 436 86.0
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 7.0e-211 737.3 435 86.4
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.2e-205 719.9 434 83.2
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 4.4e-205 718.0 435 83.0
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 5.8e-205 717.6 436 82.3
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.3e-204 716.5 423 84.6
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 2.2e-204 715.7 432 83.8
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 3.7e-204 714.9 433 83.1
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 4.9e-204 714.5 430 84.9
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 4.9e-204 714.5 423 84.4
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 8.3e-204 713.8 430 84.7
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 8.3e-204 713.8 438 84.2
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.1e-203 713.4 423 84.2
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 1.9e-203 712.6 423 84.2
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.9e-203 712.6 432 82.9
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 2.4e-203 712.2 423 84.2
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 3.2e-203 711.8 423 84.2
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.2e-202 709.9 423 84.2
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-202 709.9 432 82.6
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.6e-202 709.5 440 82.5
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 2.0e-202 709.1 425 84.0
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 2.7e-202 708.8 434 82.0
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 3.5e-202 708.4 424 84.0
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 3.5e-202 708.4 424 84.0
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 3.5e-202 708.4 424 84.0
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 4.6e-202 708.0 423 83.9
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 6.0e-202 707.6 423 83.7
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 7.8e-202 707.2 442 81.7
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 1.7e-201 706.1 423 84.2
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 1.7e-201 706.1 423 84.2
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.0e-201 705.3 441 82.3
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 3.0e-201 705.3 429 83.7
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 5.0e-201 704.5 424 83.3
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.3e-200 701.8 434 81.3
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.3e-200 701.8 434 81.3
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.2e-199 699.9 435 83.0
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 2.8e-199 698.7 424 82.5
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 3.6e-199 698.4 425 82.4
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.7e-199 698.0 434 80.6
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 4.7e-199 698.0 435 83.7
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 6.2e-199 697.6 437 81.5
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 2.3e-198 695.7 429 81.4
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.1e-198 695.3 437 80.8
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.1e-198 695.3 437 80.8
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.6e-197 692.2 427 82.7
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.6e-197 692.2 427 82.7
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 4.4e-197 691.4 425 82.8
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 9.8e-197 690.3 424 82.3
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 9.8e-197 690.3 434 80.4
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 9.8e-197 690.3 436 81.2
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.2e-196 689.1 436 81.4
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.1e-195 686.8 444 80.9
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.9e-195 686.0 441 81.2
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 2.4e-195 685.6 449 79.7
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 4.1e-195 684.9 440 79.5
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 4.1e-195 684.9 433 82.9
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 7.0e-195 684.1 440 79.1
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.0e-195 684.1 429 81.8
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.2e-195 683.7 429 81.8
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 9.2e-195 683.7 392 86.5
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.2e-194 683.3 426 82.6
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.7e-194 682.2 437 79.4
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 2.7e-194 682.2 431 80.5
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 3.5e-194 681.8 440 78.6
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 6.0e-194 681.0 433 79.2
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 7.8e-194 680.6 425 81.2
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 1.0e-193 680.2 429 81.6
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.0e-193 680.2 437 79.2
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.7e-193 679.5 429 81.4
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 3.9e-193 678.3 441 78.9
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 8.6e-193 677.2 430 80.5
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 8.6e-193 677.2 440 78.9
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.5e-192 676.4 429 81.4
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.5e-192 676.4 440 78.2
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 5.6e-192 674.5 426 80.8
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 5.6e-192 674.5 419 81.6
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 7.3e-192 674.1 438 78.3
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 9.5e-192 673.7 433 79.4
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 9.5e-192 673.7 419 81.6
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.2e-191 673.3 439 78.1
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.2e-191 673.3 431 79.1
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 2.1e-191 672.5 434 80.0
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.8e-191 672.2 424 80.7
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 3.6e-191 671.8 453 76.8
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.8e-190 669.5 433 79.7
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.3e-190 669.1 433 77.6
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 2.3e-190 669.1 403 82.9
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 3.1e-190 668.7 434 78.8
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 4.0e-190 668.3 439 77.9
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 6.8e-190 667.5 427 79.6
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 6.8e-190 667.5 403 82.6
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.2e-189 666.8 428 79.7
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.4e-189 665.2 433 76.9
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 5.8e-189 664.5 435 77.5
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.3e-188 663.3 438 78.3
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 2.2e-188 662.5 438 78.5
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 6.4e-188 661.0 434 77.9
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 6.4e-188 661.0 437 78.3
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.9e-187 659.4 437 76.7
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.2e-187 658.7 426 79.6
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 4.1e-187 658.3 436 78.4
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 4.1e-187 658.3 425 79.1
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 9.2e-187 657.1 425 79.3
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.1e-186 656.0 433 78.3
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 2.1e-186 656.0 436 76.8
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.1e-186 656.0 468 74.6
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.1e-186 656.0 459 74.5
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.7e-186 655.6 431 79.6
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-184 649.0 429 79.0
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.6e-183 646.4 438 76.3
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 2.4e-182 642.5 555 64.0
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 5.2e-182 641.3 519 66.7
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 3.4e-181 638.6 426 77.7
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 1.6e-178 629.8 424 77.1
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 6.0e-178 627.9 432 76.9
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 7.8e-178 627.5 431 74.2
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.9e-176 622.9 450 72.2
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 9.6e-176 620.5 387 79.6
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.1e-175 619.4 430 74.2
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.4e-174 616.7 385 79.5
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.8e-174 616.3 424 74.8
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 9.0e-174 614.0 397 79.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 4.9e-172 608.2 394 75.1
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 3.2e-171 605.5 390 77.7
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 7.1e-171 604.4 382 79.3
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 9.3e-171 604.0 353 84.7
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.7e-169 599.7 412 74.5
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 3.3e-168 595.5 423 71.9
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 5.6e-168 594.7 388 74.7
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 9.0e-166 587.4 361 83.1
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.0e-161 573.9 343 84.8
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.9e-160 569.7 361 80.6
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 7.9e-154 547.7 349 80.5
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.3e-153 546.2 336 81.8
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 7.4e-152 541.2 388 69.6
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.8e-150 536.6 345 80.0
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.7e-146 522.7 428 66.4
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 2.3e-145 519.6 322 78.6
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 3.9e-145 518.8 371 70.9
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 1.1e-144 517.3 431 65.7
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 9.7e-144 514.2 371 69.8
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 6.3e-143 511.5 348 75.6
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 2.6e-141 506.1 371 71.4
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 6.5e-132 474.9 261 88.9
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.1e-122 443.4 329 67.5
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.0e-120 436.8 264 82.2
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 4.5e-117 425.6 268 80.6
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 4.2e-115 419.1 383 59.5
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 2.6e-104 383.3 234 82.5
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.4e-94 349.0 238 73.1
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 2.4e-86 323.6 230 73.9
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 1.7e-84 317.4 187 85.6
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.6e-83 312.4 191 81.7
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.3e-79 301.2 365 45.5
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 8.3e-79 298.5 355 49.0
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 3.0e-68 263.5 154 81.8
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 2.2e-63 247.3 220 65.9
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.2e-63 247.3 190 65.8
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.2e-63 247.3 190 65.8
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 2.4e-62 243.8 146 82.2
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-57 228.0 245 56.7
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 6.2e-42 176.0 99 88.9
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.2e-40 171.8 139 66.2
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 5.7e-35 152.9 220 49.1
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.6e-29 133.3 294 38.4
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 9.7e-27 125.6 82 79.3
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 9.4e-22 109.0 60 90.0
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 2.1e-21 107.8 89 66.3
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.5e-19 101.7 90 60.0
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 4.3e-19 100.1 59 86.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 4.3e-19 100.1 59 86.4
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 1.5e-16 91.7 79 64.6
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 1.3e-15 88.6 50 84.0
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.1e-14 85.5 47 89.4
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 2.1e-13 81.3 45 80.0
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 7.0e-09 66.2 74 51.4
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 2.0e-08 64.7 43 74.4
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 2.6e-08 64.3 74 51.4
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 2.2e-07 61.2 43 69.8
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 2.2e-07 61.2 74 50.0
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 1.9e-06 58.2 43 65.1
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 2.5e-06 57.8 28 78.6


User provided reference genes

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