Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 7.5e-138 493.8 243 100.0
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 3.1e-123 445.3 218 99.5
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.3e-121 439.9 244 88.1
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 6.0e-119 431.0 300 75.7
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 6.2e-116 421.0 254 83.1
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 3.2e-104 382.1 244 80.3
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 5.4e-104 381.3 244 79.1
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 7.1e-104 380.9 244 81.1
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 7.1e-104 380.9 239 78.7
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 4.6e-103 378.3 244 79.1
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 1.5e-101 373.2 245 80.0
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.3e-101 372.1 244 79.9
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.3e-101 372.1 244 79.5
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 3.3e-101 372.1 244 79.5
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.6e-101 371.3 240 79.6
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 1.8e-99 366.3 240 77.1
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.8e-99 366.3 240 76.7
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 3.1e-99 365.5 240 77.5
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 3.4e-98 362.1 244 78.3
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 4.4e-98 361.7 248 75.4
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 5.8e-98 361.3 244 77.9
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 9.9e-98 360.5 244 79.5
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.7e-97 359.8 246 75.2
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.1e-96 357.1 244 78.7
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 4.2e-96 355.1 244 75.4
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.2e-95 353.6 244 74.6
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 3.5e-95 352.1 241 75.1
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 2.3e-94 349.4 239 74.1
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.3e-94 349.4 245 73.5
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 5.1e-94 348.2 244 72.1
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 5.1e-94 348.2 245 73.5
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.1e-94 348.2 245 73.5
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.1e-94 348.2 245 73.5
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.9e-93 346.3 247 72.9
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 9.6e-93 344.0 244 71.7
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.3e-92 343.6 245 74.3
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 2.1e-92 342.8 250 71.2
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.8e-92 341.7 245 72.2
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 4.8e-92 341.7 250 70.8
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 4.8e-92 341.7 244 72.1
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 8.1e-92 340.9 217 78.3
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 2.4e-91 339.3 243 72.4
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.4e-91 339.3 244 70.5
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.5e-90 336.7 257 68.5
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.8e-90 334.7 215 77.2
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 7.6e-90 334.3 244 71.3
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 7.6e-90 334.3 252 72.2
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 9.9e-90 334.0 219 73.5
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 2.2e-89 332.8 244 71.7
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 2.9e-89 332.4 239 72.0
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 3.8e-89 332.0 239 72.4
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 4.9e-89 331.6 240 72.1
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 8.4e-89 330.9 245 70.6
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 8.4e-89 330.9 237 71.7
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.4e-88 330.1 218 73.9
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 2.4e-88 329.3 245 71.4
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 3.2e-88 328.9 254 69.7
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 5.4e-88 328.2 243 70.4
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 5.4e-88 328.2 230 71.7
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 7.1e-88 327.8 241 70.1
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 7.1e-88 327.8 239 72.0
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 9.3e-88 327.4 241 69.3
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.2e-87 327.0 241 70.5
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.6e-87 326.6 237 70.9
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 3.5e-87 325.5 241 71.4
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 1.0e-86 323.9 244 70.9
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 2.3e-86 322.8 250 67.2
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 2.3e-86 322.8 241 70.5
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.9e-86 322.0 214 74.3
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 8.7e-86 320.9 243 68.3
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.1e-85 320.5 213 73.2
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.9e-85 319.7 253 67.2
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.5e-85 319.3 245 69.0
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 5.6e-85 318.2 247 66.0
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 7.4e-85 317.8 240 67.9
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.6e-84 316.6 243 65.4
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 2.8e-84 315.8 241 67.2
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 8.1e-84 314.3 195 78.5
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 3.1e-83 312.4 204 77.5
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 5.3e-83 311.6 245 67.8
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.5e-82 310.1 247 65.6
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 2.6e-82 309.3 198 76.8
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 3.4e-82 308.9 242 65.7
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 4.5e-82 308.5 243 66.7
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 7.6e-82 307.8 246 68.3
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.9e-81 305.8 244 66.0
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 8.4e-81 304.3 243 65.4
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 1.1e-80 303.9 243 64.6
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 9.3e-80 300.8 227 67.4
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 1.6e-79 300.1 243 64.2
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 2.1e-79 299.7 243 65.4
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.7e-79 299.3 195 76.4
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 4.6e-79 298.5 242 64.5
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 4.6e-79 298.5 242 64.5
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 6.0e-79 298.1 197 74.1
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 1.8e-78 296.6 226 67.7
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.8e-78 296.6 243 65.4
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 2.3e-78 296.2 189 75.1
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 3.9e-78 295.4 250 63.6
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 6.7e-78 294.7 250 63.2
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 8.7e-78 294.3 245 62.4
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.5e-77 293.5 247 63.2
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 3.3e-77 292.4 245 62.4
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 3.3e-77 292.4 214 70.6
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 4.3e-77 292.0 248 62.9
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 7.4e-77 291.2 190 72.6
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 2.4e-75 286.2 193 74.1
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 8.4e-73 277.7 211 68.2
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 5.5e-72 275.0 249 59.4
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.5e-71 272.3 204 71.1
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.5e-71 272.3 195 71.3
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 4.6e-71 271.9 237 59.1
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 3.9e-70 268.9 217 65.9
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 2.0e-66 256.5 167 76.6
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 1.4e-62 243.8 257 52.5
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 8.5e-57 224.6 202 62.9
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.1e-53 214.2 121 84.3
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 7.4e-53 211.5 120 85.0
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.8e-51 206.8 121 82.6
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.5e-50 202.2 186 58.1
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 4.2e-48 195.7 111 80.2
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 2.1e-47 193.4 165 61.8
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 2.6e-45 186.4 156 57.7
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 5.7e-45 185.3 199 46.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.1e-40 171.0 173 52.0
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 1.6e-39 167.2 175 48.0
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 6.3e-36 155.2 152 47.4
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 1.7e-28 130.6 68 88.2
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.3e-25 120.2 177 35.0
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.3e-22 110.2 103 58.3
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.1e-19 101.3 113 54.9
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 9.5e-16 88.2 152 30.3
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 6.1e-15 85.5 121 45.5
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 4.9e-12 75.9 159 31.4
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 1.1e-06 58.2 67 52.2


User provided reference genes

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