Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 4.0e-140 503.1 785 100.0
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 3.1e-68 264.2 254 55.9
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.5e-57 228.8 237 54.9
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 3.2e-57 227.6 237 54.9
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 1.2e-56 225.7 250 49.2
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 1.6e-56 225.3 237 54.0
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 1.8e-55 221.9 239 55.6
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 8.8e-55 219.5 236 54.7
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 4.4e-54 217.2 238 51.3
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 5.7e-54 216.9 239 50.6
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 1.3e-53 215.7 241 51.9
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 1.7e-53 215.3 247 51.0
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 2.8e-53 214.5 247 51.4
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 4.8e-53 213.8 239 50.2
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 1.4e-52 212.2 244 49.2
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 6.5e-50 203.4 254 46.9
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 2.5e-49 201.4 229 50.7
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 9.4e-49 199.5 245 46.5
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 9.4e-49 199.5 245 46.5
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 1.2e-48 199.1 239 47.7
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 1.2e-48 199.1 234 50.0
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.6e-48 197.6 243 46.5
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.8e-47 195.3 252 45.2
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 2.0e-46 191.8 247 47.0
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 2.0e-46 191.8 236 49.2
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 7.5e-46 189.9 255 45.9
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 7.5e-46 189.9 257 44.4
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 9.8e-46 189.5 236 48.7
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 2.8e-45 188.0 232 49.6
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 1.4e-44 185.7 249 45.0
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 1.4e-44 185.7 249 45.4
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 2.4e-44 184.9 241 46.9
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 4.1e-44 184.1 217 47.9
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 1.6e-43 182.2 241 46.5
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 2.0e-43 181.8 241 46.9
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 7.7e-43 179.9 241 46.5
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 1.3e-42 179.1 241 45.6
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 3.8e-42 177.6 241 42.3
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 5.0e-42 177.2 238 43.7
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 2.5e-41 174.9 266 42.9
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 3.3e-41 174.5 242 44.2
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 3.3e-41 174.5 242 44.2
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 9.5e-41 172.9 244 45.1
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.2e-40 172.6 233 44.6
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 1.8e-39 168.7 244 42.2
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 2.3e-39 168.3 246 44.3
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 2.3e-39 168.3 85 95.3
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 4.0e-39 167.5 233 44.2
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 5.2e-39 167.2 257 41.6
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 6.8e-39 166.8 241 42.3
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 2.0e-38 165.2 246 43.9
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 2.0e-38 165.2 246 43.9
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 2.6e-38 164.9 260 38.8
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.4e-38 164.5 242 44.2
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 3.4e-38 164.5 231 42.4
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 4.4e-38 164.1 233 42.9
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 5.7e-38 163.7 238 45.4
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 7.5e-38 163.3 233 42.9
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-37 162.5 235 44.3
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-37 162.5 234 43.6
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 1.3e-37 162.5 238 44.5
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 1.4e-36 159.1 228 43.9
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 2.4e-36 158.3 233 42.1
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 3.1e-36 157.9 256 41.0
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 2.7e-35 154.8 240 43.3
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 3.5e-35 154.5 234 42.7
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 5.9e-35 153.7 253 41.9
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 5.0e-34 150.6 234 41.5
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 5.0e-34 150.6 249 41.0
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 8.6e-34 149.8 214 42.5
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 4.7e-32 144.1 143 53.8
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 1.8e-31 142.1 166 46.4
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 1.8e-31 142.1 241 40.7
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 1.5e-30 139.0 239 38.1
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.4e-30 137.5 241 41.5
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 5.8e-30 137.1 145 52.4
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 7.5e-30 136.7 241 40.7
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 3.7e-29 134.4 243 39.5
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 2.4e-28 131.7 172 45.3
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.2e-28 131.3 152 47.4
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 2.7e-27 128.3 177 49.2
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 6.2e-24 117.1 158 43.0
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 6.2e-24 117.1 158 43.0
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 8.0e-24 116.7 158 42.4
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 7.5e-22 110.2 259 34.0
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 9.8e-22 109.8 85 57.6
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.9e-21 107.5 94 53.2
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 1.9e-20 105.5 237 34.2
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 4.1e-20 104.4 87 55.2
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 4.1e-20 104.4 86 55.8
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 2.1e-19 102.1 207 40.6
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 2.7e-19 101.7 112 50.0
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 4.6e-19 100.9 79 59.5
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 4.6e-19 100.9 207 40.1
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 5.1e-18 97.4 235 37.0
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.5e-17 95.9 87 54.0
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 6.2e-16 90.5 88 53.4
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 6.2e-16 90.5 240 32.9
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 5.2e-15 87.4 82 45.1
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 2.6e-14 85.1 85 48.2
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 5.8e-14 84.0 68 57.4
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 5.8e-14 84.0 238 29.8
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 9.9e-14 83.2 158 36.7
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 9.9e-14 83.2 85 49.4
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 2.2e-13 82.0 85 49.4
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 3.7e-13 81.3 226 36.3
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 2.4e-12 78.6 83 51.8
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 1.6e-11 75.9 80 51.2
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 1.0e-10 73.2 64 50.0
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-10 72.8 58 60.3
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.7e-10 72.4 86 46.5
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.7e-10 72.4 86 46.5
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 2.3e-10 72.0 140 30.7
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 3.9e-10 71.2 58 58.6
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.9e-10 71.2 58 58.6
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.1e-09 69.7 58 58.6
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.5e-09 69.3 92 46.7
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 5.6e-09 67.4 166 29.5
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 9.5e-09 66.6 104 33.7
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 2.8e-08 65.1 58 56.9
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.6e-08 64.7 207 25.1
COL.COLO4_21525 Corchorus olitorius HOM05D000424 ORTHO05D000355 6.2e-08 63.9 93 33.3
RcHm_v2.0_Chr4g0386451 Rosa chinensis HOM05D000424 ORTHO05D000355 6.2e-08 63.9 94 35.1
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 8.1e-08 63.5 67 43.3
arahy.Tifrunner.gnm1.ann1.XEFQ2J Arachis hypogaea HOM05D005287 ORTHO05D006893 1.1e-07 63.2 58 58.6
arahy.Tifrunner.gnm1.ann1.KL2II8 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.4e-07 62.8 58 58.6
FAN12G0771 Fragaria x ananassa HOM05D007063 ORTHO05D008822 1.4e-07 62.8 136 27.9
Thecc.04G235900 Theobroma cacao HOM05D000424 ORTHO05D000355 1.4e-07 62.8 93 35.5
FvH4_4g35550 Fragaria vesca HOM05D007063 ORTHO05D008822 2.4e-07 62.0 136 27.9
FvH4_4g00721 Fragaria vesca HOM05D000424 ORTHO05D000355 3.1e-07 61.6 94 36.2
FAN17G0779 Fragaria x ananassa HOM05D007063 ORTHO05D008822 3.1e-07 61.6 136 27.2
MBI16_g31483_MAGBIO Magnolia biondii HOM05D007063 ORTHO05D008822 3.1e-07 61.6 113 36.3
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 3.1e-07 61.6 198 27.3
arahy.Tifrunner.gnm1.ann1.DD86YU Arachis hypogaea HOM05D005287 ORTHO05D006893 4.0e-07 61.2 58 56.9
PGR119G2491 Punica granatum HOM05D007063 ORTHO05D008822 4.0e-07 61.2 94 30.9
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 5.2e-07 60.8 245 25.7
CSS0037924 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 6.8e-07 60.5 219 30.6
FAN07G2566 Fragaria x ananassa HOM05D007063 ORTHO05D008822 6.8e-07 60.5 109 28.4
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 6.8e-07 60.5 201 24.4
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 6.8e-07 60.5 201 24.4
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 6.8e-07 60.5 213 24.4
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 6.8e-07 60.5 142 32.4
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 6.8e-07 60.5 239 25.5
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 8.9e-07 60.1 72 50.0
Migut.L01363 Erythranthe guttata HOM05D007063 ORTHO05D008822 8.9e-07 60.1 106 32.1
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 8.9e-07 60.1 237 24.1
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 1.5e-06 59.3 204 24.0
Os03g0201400 Oryza sativa ssp. japonica HOM05D005287 ORTHO05D006893 1.5e-06 59.3 205 25.9
RcHm_v2.0_Chr4g0445191 Rosa chinensis HOM05D007063 ORTHO05D008822 1.5e-06 59.3 136 27.2
CSS0011148 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 2.0e-06 58.9 102 37.3
HPP92_023662 Vanilla planifolia HOM05D023777 ORTHO05D031065 2.0e-06 58.9 78 41.0
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 2.6e-06 58.5 109 30.3
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 2.6e-06 58.5 108 32.4
PSO541G5427 Papaver somniferum HOM05D007063 ORTHO05D008822 2.6e-06 58.5 111 34.2
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.6e-06 58.5 105 29.5
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.4e-06 58.2 145 26.9
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 3.4e-06 58.2 104 32.7
FAN22G1231 Fragaria x ananassa HOM05D007063 ORTHO05D008822 3.4e-06 58.2 136 27.2
Gohir.D03G092300 Gossypium hirsutum HOM05D000424 ORTHO05D000355 3.4e-06 58.2 93 30.1
Gorai.003G095900 Gossypium raimondii HOM05D000424 ORTHO05D000355 3.4e-06 58.2 93 30.1
arahy.Tifrunner.gnm1.ann1.L7CVHL Arachis hypogaea HOM05D000424 ORTHO05D000355 4.4e-06 57.8 94 31.9
CDE06G2628 Ceratophyllum demersum HOM05D007063 ORTHO05D008822 4.4e-06 57.8 108 29.6
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 4.4e-06 57.8 105 31.4
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 4.4e-06 57.8 71 33.8
Hma1.2p1_1572F.1_g291500 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 4.4e-06 57.8 90 33.3
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 4.4e-06 57.8 201 24.9
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 5.8e-06 57.4 185 25.4
TWI53G1953 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 5.8e-06 57.4 97 32.0
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 7.6e-06 57.0 252 25.4
Cpa.g.sc58.67 Carica papaya HOM05D000424 ORTHO05D000355 9.9e-06 56.6 97 29.9
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 9.9e-06 56.6 213 24.4
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 9.9e-06 56.6 215 24.7
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 9.9e-06 56.6 153 26.8


User provided reference genes

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