Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 5.7e-109 397.5 191 100.0
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.8e-95 352.1 191 89.0
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.2e-74 283.5 178 74.2
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 2.7e-74 282.3 178 71.9
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 2.7e-74 282.3 194 70.6
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 3.5e-74 282.0 178 71.9
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 4.6e-74 281.6 178 74.2
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 6.0e-74 281.2 194 70.6
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 7.8e-74 280.8 192 69.3
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.0e-73 280.4 178 74.2
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.3e-73 280.0 191 70.7
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.3e-73 280.0 193 71.0
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.3e-73 280.0 193 71.5
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.0e-73 278.9 185 73.0
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.0e-73 278.9 192 68.2
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 3.9e-73 278.5 189 72.0
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 5.1e-73 278.1 194 70.1
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.1e-72 276.9 182 72.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.1e-72 276.9 191 69.1
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.9e-72 276.2 195 67.7
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 5.6e-72 274.6 195 66.7
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 5.6e-72 274.6 179 71.5
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 9.6e-72 273.9 178 70.8
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 9.6e-72 273.9 193 68.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.6e-72 273.9 194 68.6
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 4.8e-71 271.6 177 71.2
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 1.1e-70 270.4 185 69.2
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 4.0e-70 268.5 194 66.5
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 9.0e-70 267.3 194 65.5
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.2e-69 266.9 178 70.8
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.2e-69 266.9 178 70.8
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 2.0e-69 266.2 177 70.1
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.0e-69 266.2 186 68.8
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.6e-69 265.8 178 71.3
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 3.4e-69 265.4 178 70.2
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 4.5e-69 265.0 185 67.0
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 5.8e-69 264.6 194 67.5
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 5.8e-69 264.6 193 65.3
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 3.8e-68 261.9 177 68.4
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 3.8e-68 261.9 181 68.0
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 4.9e-68 261.5 183 69.9
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 8.4e-68 260.8 182 68.7
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.1e-67 260.4 178 66.3
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.1e-67 260.4 178 67.4
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 2.4e-67 259.2 192 67.2
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 2.4e-67 259.2 192 65.1
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 4.2e-67 258.5 195 66.2
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 5.4e-67 258.1 175 69.7
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 5.4e-67 258.1 184 65.2
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 7.1e-67 257.7 177 67.8
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.1e-67 257.7 177 67.8
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 9.3e-67 257.3 172 69.2
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.2e-66 256.9 184 66.8
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.2e-66 256.9 194 67.5
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.7e-66 255.8 196 65.3
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.7e-66 255.8 178 67.4
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.7e-66 255.8 178 65.7
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 3.5e-66 255.4 195 63.1
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 3.5e-66 255.4 195 62.1
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.0e-66 254.6 189 64.0
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 7.9e-66 254.2 178 65.7
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.3e-65 253.4 189 63.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.0e-65 252.3 182 65.4
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 6.7e-65 251.1 183 66.7
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 8.7e-65 250.8 206 57.3
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.5e-64 250.0 194 62.9
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.5e-64 250.0 171 68.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 7.4e-64 247.7 183 65.0
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 9.6e-64 247.3 169 68.6
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 2.1e-63 246.1 182 64.3
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 2.1e-63 246.1 182 64.3
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 3.6e-63 245.4 165 70.3
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 3.6e-63 245.4 167 71.3
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 3.6e-63 245.4 180 64.4
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 2.4e-62 242.7 197 60.9
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 2.4e-62 242.7 185 63.2
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 5.3e-62 241.5 181 63.5
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 5.3e-62 241.5 177 63.8
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 5.3e-62 241.5 184 62.0
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 9.0e-62 240.7 167 69.5
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 2.6e-61 239.2 170 64.7
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 2.6e-61 239.2 170 68.2
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 4.5e-61 238.4 182 62.6
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.8e-61 238.0 176 60.8
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 5.8e-61 238.0 174 61.5
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.3e-60 236.9 195 59.5
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.8e-60 235.3 173 65.9
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.4e-60 234.6 182 61.0
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 6.4e-60 234.6 173 66.5
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 8.4e-60 234.2 204 54.4
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.2e-59 232.3 181 59.7
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 4.2e-59 231.9 182 61.0
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 4.2e-59 231.9 182 61.0
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 9.3e-59 230.7 174 60.3
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.6e-58 229.9 180 59.4
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.6e-58 229.9 176 63.1
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.6e-58 229.9 181 61.9
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 3.5e-58 228.8 181 60.2
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 4.6e-58 228.4 191 57.6
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 4.8e-55 218.4 179 58.1
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 6.2e-55 218.0 177 60.5
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 6.2e-55 218.0 173 58.4
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 6.9e-54 214.5 150 66.7
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.3e-52 210.3 176 54.5
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 3.8e-52 208.8 162 63.0
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.9e-51 206.5 156 64.7
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 2.5e-51 206.1 157 65.6
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 7.1e-51 204.5 136 71.3
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 9.3e-51 204.1 154 61.7
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 5.1e-49 198.4 130 68.5
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 3.3e-48 195.7 173 57.8
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 7.4e-48 194.5 133 68.4
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-46 190.3 161 54.7
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 4.1e-46 188.7 181 49.7
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.0e-46 187.6 161 53.4
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.0e-44 184.1 161 53.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.2e-44 183.0 193 49.2
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-43 180.6 147 57.8
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.4e-43 180.3 133 59.4
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.6e-42 175.3 158 51.3
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.8e-41 173.3 112 72.3
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.3e-40 168.7 134 56.7
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.4e-38 162.9 177 46.3
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.0e-37 159.8 192 42.2
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 7.7e-37 157.9 118 65.3
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.8e-36 155.6 120 59.2
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 6.5e-36 154.8 175 45.7
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 1.4e-35 153.7 178 47.2
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.4e-33 147.1 111 60.4
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.8e-33 146.7 161 46.6
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.5e-27 126.3 200 36.0
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.4e-27 124.4 88 60.2
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.6e-26 123.6 87 65.5
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 5.0e-20 102.1 117 47.0
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.5e-20 101.7 87 50.6
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.2e-10 70.9 105 39.0
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.2e-10 70.9 58 62.1
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.1e-10 70.1 53 58.5
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 4.0e-09 65.9 52 63.5
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 6.8e-09 65.1 48 62.5
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 8.8e-09 64.7 52 57.7
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 5.7e-08 62.0 51 54.9


User provided reference genes

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