Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 3.1e-201 704.9 352 100.0
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 3.4e-139 498.8 266 93.2
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 2.3e-124 449.5 355 64.5
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 2.7e-120 436.0 357 62.7
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 3.5e-120 435.6 357 63.9
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 3.3e-118 429.1 356 62.1
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 4.0e-116 422.2 358 61.2
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 4.0e-116 422.2 357 60.2
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 1.2e-115 420.6 360 60.6
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 4.4e-115 418.7 359 60.4
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 4.4e-115 418.7 354 61.3
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 7.6e-115 417.9 362 59.4
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 1.3e-114 417.2 356 61.2
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 2.2e-114 416.4 357 62.2
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 2.9e-114 416.0 353 59.5
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.9e-114 416.0 353 61.8
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 4.2e-113 412.1 355 59.4
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 5.4e-113 411.8 350 61.4
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 1.2e-112 410.6 371 56.9
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.2e-112 410.6 357 57.7
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 4.6e-112 408.7 354 61.6
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 1.7e-111 406.8 354 59.3
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 3.9e-111 405.6 354 59.0
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 8.7e-111 404.4 358 58.4
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 5.6e-110 401.7 345 62.0
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 6.2e-109 398.3 347 61.1
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 2.4e-108 396.4 369 57.2
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 5.3e-108 395.2 365 58.4
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 5.3e-108 395.2 358 57.3
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 6.9e-108 394.8 349 58.5
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 9.0e-108 394.4 361 57.1
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 4.4e-107 392.1 354 57.6
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 4.4e-107 392.1 356 56.5
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 7.6e-107 391.3 360 57.5
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 3.8e-106 389.0 356 58.1
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 1.9e-105 386.7 357 55.7
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 2.4e-105 386.3 331 61.0
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 5.4e-105 385.2 346 59.0
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 9.3e-105 384.4 348 56.3
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 2.1e-104 383.3 357 55.5
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 3.5e-104 382.5 357 56.0
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 1.0e-103 380.9 339 58.4
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 2.3e-103 379.8 356 55.6
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 1.1e-102 377.5 344 55.2
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 2.5e-102 376.3 337 57.3
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 3.3e-102 375.9 356 55.3
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 7.4e-102 374.8 354 55.9
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 1.3e-101 374.0 355 52.7
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 1.6e-101 373.6 347 55.9
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 1.6e-101 373.6 355 54.1
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 1.6e-101 373.6 353 55.0
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 4.8e-101 372.1 362 55.0
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 4.8e-101 372.1 355 52.1
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 2.4e-100 369.8 337 57.3
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 3.1e-100 369.4 353 56.4
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 5.3e-100 368.6 355 55.8
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 9.0e-100 367.9 353 53.0
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 1.2e-99 367.5 358 55.3
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 3.5e-96 355.9 358 55.0
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 1.0e-95 354.4 305 60.0
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 6.7e-95 351.7 354 53.4
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 1.9e-94 350.1 359 54.0
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 2.5e-94 349.7 359 54.0
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 4.3e-94 349.0 359 54.0
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 4.3e-94 349.0 306 62.4
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 4.3e-94 349.0 305 59.3
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 1.8e-92 343.6 375 52.0
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 1.8e-92 343.6 359 54.6
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 1.8e-92 343.6 357 53.8
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 4.0e-92 342.4 367 52.6
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 5.3e-92 342.0 340 55.0
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 6.9e-92 341.7 353 53.8
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.3e-90 337.4 325 56.6
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 1.7e-90 337.0 359 55.2
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 2.2e-90 336.7 355 53.2
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 2.9e-90 336.3 357 53.8
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 4.9e-90 335.5 346 53.8
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 5.1e-87 325.5 253 64.4
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 4.3e-86 322.4 351 48.7
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 7.4e-86 321.6 286 60.5
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 6.3e-85 318.5 299 58.2
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 9.0e-84 314.7 279 58.8
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 4.5e-83 312.4 342 49.4
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 1.9e-81 307.0 287 55.4
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 9.3e-81 304.7 259 58.3
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 1.6e-80 303.9 337 50.7
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 8.7e-79 298.1 276 57.6
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 8.7e-79 298.1 333 48.9
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 8.7e-79 298.1 265 59.2
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 5.9e-75 285.4 231 62.3
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 1.0e-74 284.6 274 56.9
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 1.0e-71 274.6 350 46.9
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 1.1e-68 264.6 283 52.7
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 3.6e-64 249.6 270 54.1
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 6.5e-58 228.8 337 41.2
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 2.6e-54 216.9 220 54.5
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 3.1e-52 209.9 165 65.5
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 2.7e-51 206.8 259 49.4
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 3.5e-51 206.5 355 38.3
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 1.7e-50 204.1 287 43.6
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 8.5e-50 201.8 194 54.6
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 2.4e-44 183.7 336 37.2
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 2.4e-44 183.7 327 37.6
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 2.0e-43 180.6 341 36.1
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 2.2e-37 160.6 162 52.5
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 5.4e-36 156.0 222 45.5
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 7.0e-36 155.6 219 44.7
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 2.3e-34 150.6 252 38.9
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 2.0e-27 127.5 193 40.4
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 1.3e-26 124.8 355 30.4
Sopen09g009530 Solanum pennellii HOM05D005940 ORTHO05D007027 1.5e-22 111.3 81 61.7
MBI14_g28170_MAGBIO Magnolia biondii HOM05D005940 ORTHO05D007027 1.3e-21 108.2 85 60.0
Haze_16941 Corylus avellana HOM05D005940 ORTHO05D007027 1.4e-20 104.8 99 54.5
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 5.4e-20 102.8 234 39.3
ECA240G2370 Erigeron canadensis HOM05D005940 ORTHO05D007027 7.3e-17 92.4 78 52.6
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-16 90.5 66 66.7
SEGI_30186 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 1.1e-15 88.6 87 47.1
MCO14G149 Micromonas commoda HOM05D005940 ORTHO05D007027 4.4e-14 83.2 296 27.7
PRCOL_00002492 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 4.1e-12 76.6 190 31.1
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 1.6e-11 74.7 189 30.7
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 7.8e-11 72.4 42 81.0
TPR.G40057 Trifolium pratense HOM05D005940 ORTHO05D007027 8.6e-10 68.9 57 54.4
CSS0026064 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.9e-09 67.8 50 64.0
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 2.8e-08 63.9 55 60.0
FAN06G0223 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.4e-07 61.6 29 89.7
PRCOL_00002155 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 5.2e-07 59.7 318 27.0
Cre01.g033763 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 3.4e-06 57.0 58 51.7
SMO112G0074 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 7.6e-06 55.8 177 32.2


User provided reference genes

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