Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.1e-126 455.7 228 100.0
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 4.1e-122 441.4 228 96.1
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 7.3e-119 430.6 228 93.9
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 9.2e-114 413.7 230 90.9
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.3e-91 340.1 231 79.2
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 3.8e-91 338.6 225 78.2
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 4.9e-91 338.2 225 77.8
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.4e-90 336.7 225 77.8
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 2.3e-88 329.3 231 74.0
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 2.4e-85 319.3 232 73.7
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.5e-84 316.6 227 71.8
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 3.4e-84 315.5 230 72.6
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 4.5e-84 315.1 230 72.6
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.0e-83 313.9 228 72.4
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.4e-82 310.1 226 73.0
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.9e-82 309.7 229 71.2
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.9e-82 309.7 231 71.4
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 3.2e-82 308.9 235 68.1
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 4.2e-82 308.5 231 70.6
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 9.3e-82 307.4 239 68.6
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.2e-81 307.0 229 72.5
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 2.7e-81 305.8 233 69.1
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 6.1e-81 304.7 236 66.5
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 3.0e-80 302.4 235 70.2
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 5.1e-80 301.6 240 69.6
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 6.7e-80 301.2 238 67.6
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 1.5e-79 300.1 226 69.9
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 3.3e-79 298.9 228 68.9
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 4.3e-79 298.5 227 69.2
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 5.7e-79 298.1 226 68.1
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 5.7e-79 298.1 226 68.1
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.3e-78 297.0 221 69.7
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.3e-78 297.0 216 69.4
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.3e-78 297.0 238 67.6
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.3e-78 297.0 240 67.1
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 2.2e-78 296.2 234 66.2
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.2e-78 296.2 233 67.4
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.2e-78 296.2 233 67.4
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.8e-78 295.8 226 68.1
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.7e-78 295.4 223 69.5
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 8.2e-78 294.3 224 69.2
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 3.1e-77 292.4 227 69.6
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 4.1e-77 292.0 220 68.6
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 5.3e-77 291.6 238 63.9
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 6.9e-77 291.2 220 68.2
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 9.0e-77 290.8 220 68.6
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 9.0e-77 290.8 234 66.2
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 9.0e-77 290.8 230 68.3
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 9.0e-77 290.8 236 67.8
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 1.5e-76 290.0 218 67.0
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.6e-76 289.3 227 66.1
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.6e-76 289.3 227 66.1
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.6e-76 289.3 225 69.3
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 2.6e-76 289.3 220 67.3
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 3.4e-76 288.9 239 64.4
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 3.4e-76 288.9 227 66.5
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 3.4e-76 288.9 235 65.5
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 4.5e-76 288.5 230 67.8
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.0e-75 287.3 220 66.8
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.0e-75 287.3 220 66.8
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.3e-75 287.0 226 67.7
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 3.8e-75 285.4 229 65.5
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.9e-74 283.1 238 64.7
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 3.2e-74 282.3 229 67.7
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.6e-73 280.0 220 65.9
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 1.6e-73 280.0 220 65.9
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.6e-73 280.0 220 65.9
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.6e-73 280.0 235 62.1
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.1e-73 279.6 232 65.9
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 2.7e-73 279.3 220 67.3
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 4.6e-73 278.5 220 67.3
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 4.6e-73 278.5 220 68.2
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 4.6e-73 278.5 217 68.2
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 4.6e-73 278.5 227 67.4
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 1.0e-72 277.3 201 69.7
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.4e-72 276.9 230 65.7
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.4e-72 276.9 210 69.0
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.3e-72 276.2 220 66.4
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 8.8e-72 274.2 234 63.2
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 1.1e-71 273.9 220 66.4
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-71 273.9 220 65.9
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.1e-71 273.9 220 66.8
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.5e-71 273.5 235 61.7
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 2.0e-71 273.1 210 68.1
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 7.4e-71 271.2 220 65.9
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 3.7e-70 268.9 210 66.2
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 4.8e-70 268.5 197 69.0
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 8.2e-70 267.7 221 62.9
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 1.1e-69 267.3 231 61.5
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.1e-69 265.8 232 65.1
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 7.7e-68 261.2 215 62.3
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.0e-67 260.8 225 60.9
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 1.7e-67 260.0 208 64.9
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 9.4e-66 254.2 229 60.3
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 3.6e-65 252.3 182 68.7
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 3.6e-65 252.3 222 60.8
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 2.3e-64 249.6 229 59.4
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 5.1e-64 248.4 195 65.1
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 2.0e-63 246.5 183 67.2
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 5.7e-63 245.0 230 58.3
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 4.8e-62 241.9 224 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.1e-61 240.7 179 65.4
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.4e-61 240.4 176 69.3
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 5.3e-61 238.4 179 64.2
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.0e-60 236.5 180 64.4
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.2e-57 227.3 172 69.2
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 5.3e-53 211.8 145 71.7
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 9.1e-53 211.1 134 71.6
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 4.4e-47 192.2 230 50.9
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 2.4e-45 186.4 182 50.5
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 3.1e-45 186.0 147 61.2
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 9.1e-45 184.5 147 60.5
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 9.1e-45 184.5 147 60.5
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.7e-44 183.0 146 60.3
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 4.5e-44 182.2 146 60.3
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 7.7e-44 181.4 146 59.6
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 7.7e-44 181.4 147 59.9
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 1.0e-43 181.0 147 59.2
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 1.0e-43 181.0 147 59.2
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 1.0e-43 181.0 147 59.2
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.3e-43 180.6 146 58.2
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.2e-43 179.9 145 59.3
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.2e-43 179.9 146 59.6
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 2.9e-43 179.5 147 58.5
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 2.9e-43 179.5 147 58.5
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.1e-42 177.6 146 58.2
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.0e-40 169.5 146 54.8
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.6e-39 166.4 101 79.2
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-34 151.0 104 71.2
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.5e-34 150.6 192 44.8
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.5e-31 140.6 234 43.2
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 8.3e-30 134.8 105 61.9
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 5.9e-28 128.6 145 43.4
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 5.9e-28 128.6 160 43.1
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 7.8e-28 128.3 93 71.0
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.3e-27 127.5 132 53.0
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.3e-27 126.7 167 43.1
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 6.6e-27 125.2 133 60.2
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.6e-25 120.6 170 40.0
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 3.7e-22 109.4 230 39.1
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.1e-21 105.9 135 45.9
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 2.7e-20 103.2 202 31.7
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 3.0e-19 99.8 70 61.4
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 6.6e-19 98.6 58 81.0
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.5e-18 97.4 150 35.3
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.5e-18 96.7 101 52.5
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 7.3e-18 95.1 155 34.2
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.2e-15 87.8 100 56.0
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 5.4e-13 79.0 113 40.7
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 4.7e-09 65.9 69 52.2
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 4.0e-08 62.8 59 49.2


User provided reference genes

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