Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 6.3e-146 520.8 266 100.0
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 2.7e-133 478.8 266 91.4
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 5.7e-131 471.1 266 91.7
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 8.2e-130 467.2 266 89.5
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 3.8e-127 458.4 268 89.2
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 3.8e-127 458.4 274 88.0
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.8e-127 458.4 281 86.1
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 5.0e-127 458.0 269 88.5
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.9e-126 456.1 269 87.7
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 3.2e-126 455.3 269 87.7
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.6e-125 453.0 267 86.5
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 4.7e-125 451.4 268 86.6
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.4e-124 449.9 269 86.2
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.4e-124 449.9 269 86.6
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 2.3e-124 449.1 267 87.3
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 8.8e-124 447.2 270 86.7
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 8.8e-124 447.2 267 85.8
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.2e-123 446.8 269 87.4
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.2e-123 446.8 269 85.9
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.4e-123 444.9 269 84.8
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 5.7e-123 444.5 268 86.2
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 7.5e-123 444.1 269 84.8
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.7e-122 443.0 268 85.8
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.7e-122 443.0 269 84.4
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.8e-122 442.2 269 86.2
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.8e-122 442.2 266 85.3
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 3.7e-122 441.8 269 83.6
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 5.3e-121 438.0 265 85.3
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 7.0e-121 437.6 265 84.5
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 9.1e-121 437.2 266 84.6
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 1.2e-120 436.8 266 84.6
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.6e-120 436.4 261 85.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.6e-120 436.4 269 85.1
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 2.0e-120 436.0 268 86.2
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.0e-120 436.0 265 86.0
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 3.5e-120 435.3 269 84.4
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 5.9e-120 434.5 269 83.3
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.0e-119 433.7 270 83.3
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 8.5e-119 430.6 270 84.1
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.1e-118 430.3 264 83.7
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.5e-118 429.9 264 84.8
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.9e-118 429.5 264 83.7
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 2.5e-118 429.1 269 83.6
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.2e-118 428.3 269 83.6
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.2e-118 427.6 268 84.7
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 7.2e-118 427.6 269 83.6
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.4e-118 427.2 269 83.3
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.2e-117 426.8 269 82.9
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.2e-117 426.8 266 84.6
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.7e-117 425.6 269 82.5
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.1e-117 424.5 267 83.1
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.0e-116 423.7 267 83.1
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.8e-116 422.9 268 83.2
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.0e-116 422.2 267 82.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 3.0e-116 422.2 270 83.7
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 4.0e-116 421.8 261 83.1
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.0e-116 421.8 267 81.6
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 5.2e-116 421.4 276 82.2
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 5.2e-116 421.4 269 83.6
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 6.8e-116 421.0 269 79.2
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.5e-115 419.9 269 80.7
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 2.6e-115 419.1 269 82.2
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 2.6e-115 419.1 272 83.1
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.6e-115 419.1 267 83.5
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 2.6e-115 419.1 252 87.3
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 3.4e-115 418.7 264 81.8
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.7e-115 417.9 251 86.9
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 5.7e-115 417.9 269 83.6
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 5.7e-115 417.9 270 81.9
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.5e-115 417.5 264 82.2
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 9.8e-115 417.2 264 81.4
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 9.8e-115 417.2 263 82.5
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.7e-114 416.4 268 82.1
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.2e-114 416.0 267 82.4
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 2.2e-114 416.0 263 84.0
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 6.3e-114 414.5 267 82.8
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.4e-113 412.5 254 85.0
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.1e-113 412.1 268 81.3
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 4.1e-113 411.8 269 81.8
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 5.4e-113 411.4 264 79.9
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-112 409.8 295 76.3
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.0e-112 409.5 268 78.0
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 3.5e-112 408.7 269 78.8
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.5e-112 408.3 264 80.3
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 5.9e-112 407.9 292 76.7
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.7e-112 407.5 263 80.2
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.9e-111 405.6 252 83.7
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 8.5e-111 404.1 269 79.2
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.2e-110 401.0 263 79.5
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.2e-109 400.2 252 81.7
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.6e-109 399.8 266 78.9
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.8e-109 399.1 259 79.5
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 6.1e-109 397.9 310 71.0
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 6.1e-109 397.9 257 80.2
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-107 393.7 267 78.3
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.0e-107 392.9 240 85.0
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.4e-107 392.1 250 82.0
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 7.5e-107 391.0 268 78.0
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 2.8e-106 389.0 261 77.4
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 6.3e-106 387.9 320 68.8
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 9.2e-105 384.0 279 73.8
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 9.2e-105 384.0 270 75.2
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 2.7e-104 382.5 254 79.1
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 2.9e-103 379.0 266 75.6
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 8.6e-103 377.5 269 73.6
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.2e-101 373.6 254 78.0
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 4.7e-101 371.7 273 73.3
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 8.0e-101 370.9 270 73.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 4.0e-100 368.6 266 73.3
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.7e-98 363.2 259 75.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.9e-98 362.5 263 72.6
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 2.9e-98 362.5 262 71.8
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.4e-98 361.3 227 83.3
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.1e-97 360.5 277 73.6
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.4e-97 359.4 263 72.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 7.0e-97 357.8 263 71.9
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.6e-96 356.7 262 71.8
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 7.8e-96 354.4 264 71.2
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 7.8e-96 354.4 268 71.3
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.0e-95 354.0 262 70.2
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 2.3e-95 352.8 263 71.1
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 5.0e-95 351.7 264 70.5
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 8.6e-95 350.9 263 70.7
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 8.6e-95 350.9 265 69.8
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.9e-94 349.7 262 71.8
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.3e-94 349.0 256 70.3
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.3e-94 349.0 256 70.3
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 5.6e-94 348.2 263 70.0
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 2.1e-93 346.3 270 70.7
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.8e-93 345.9 254 72.4
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 3.6e-93 345.5 262 71.0
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.6e-93 345.5 262 71.0
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 4.7e-93 345.1 260 69.6
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 4.7e-93 345.1 256 69.9
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 6.2e-93 344.7 261 71.3
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.1e-92 344.0 237 76.8
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 4.0e-92 342.0 282 65.6
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 2.9e-90 335.9 258 70.5
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 3.7e-90 335.5 212 84.0
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 6.0e-88 328.2 192 88.5
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 6.0e-88 328.2 260 68.1
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 3.9e-87 325.5 263 65.0
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 5.6e-86 321.6 261 65.9
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 2.1e-85 319.7 196 83.7
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 8.1e-85 317.8 265 65.3
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 3.4e-83 312.4 265 64.5
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.9e-82 309.3 241 71.0
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 9.2e-81 304.3 262 63.7
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 2.7e-80 302.8 261 62.8
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.6e-77 293.5 195 77.4
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.4e-73 279.6 144 95.1
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.7e-64 249.6 176 75.6
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 6.5e-42 175.3 240 46.2
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.9e-39 166.0 148 58.8
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 3.3e-38 162.9 205 45.9
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 9.0e-36 154.8 244 43.0
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.9e-34 149.8 123 70.7
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 2.9e-34 149.8 117 70.1
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.9e-31 139.4 74 95.9
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 8.8e-31 138.3 93 74.2
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 9.1e-28 128.3 230 40.0
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.2e-26 123.6 76 80.3
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.5e-19 100.9 179 38.5
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 5.0e-18 95.9 124 42.7
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 4.2e-17 92.8 119 47.9
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.7e-16 90.1 100 54.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 8.2e-13 78.6 41 82.9
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 9.1e-12 75.1 59 66.1
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.9e-11 72.4 41 78.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 7.7e-11 72.0 43 72.1
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 4.7e-08 62.8 138 33.3
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 3.0e-07 60.1 86 34.9
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 5.2e-07 59.3 32 93.8


User provided reference genes

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