Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 0.0e+00 2492.6 1318 100.0
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 0.0e+00 1995.7 1319 80.3
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 0.0e+00 1792.3 1328 76.8
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 0.0e+00 1698.3 1329 73.7
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 2.3e-289 999.6 1330 48.9
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 6.7e-273 944.9 1365 47.0
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.4e-270 937.2 1351 47.2
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 3.6e-250 869.4 1372 45.3
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 5.0e-236 822.4 1411 43.2
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 9.4e-235 818.1 1244 44.3
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 2.1e-234 817.0 1294 46.1
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 2.3e-233 813.5 1343 42.3
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 6.7e-233 812.0 1384 43.1
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.5e-232 810.8 1384 43.1
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.6e-232 810.1 1327 43.8
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 4.8e-231 805.8 1377 42.8
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 2.5e-219 766.9 1315 41.1
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.2e-218 764.6 1300 41.8
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 3.6e-218 763.1 1394 41.0
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 6.8e-201 705.7 1254 40.4
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 2.2e-199 700.7 1394 40.6
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.4e-198 697.2 1307 38.9
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.7e-197 693.7 1313 38.8
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 3.4e-192 676.8 1484 36.3
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.2e-189 668.3 1373 40.1
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 3.0e-188 663.7 1427 37.7
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 1.2e-186 658.3 1427 37.4
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 1.9e-182 644.4 1427 37.8
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 7.6e-176 622.5 1427 37.1
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 1.4e-174 618.2 1371 38.1
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 5.4e-174 616.3 1437 36.6
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 9.9e-168 595.5 1393 38.3
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.7e-167 594.7 1440 36.0
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 8.4e-167 592.4 1368 37.7
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 3.0e-164 583.9 1334 39.2
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 2.1e-162 577.8 1370 36.8
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 3.7e-162 577.0 1440 36.5
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.8e-161 574.7 1369 36.7
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.1e-161 573.9 1370 36.7
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 2.9e-159 567.4 1436 36.1
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.8e-159 567.0 1370 36.7
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 2.7e-157 560.8 1465 35.3
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.6e-157 560.1 1373 37.1
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.7e-154 550.4 1393 34.3
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 2.0e-152 544.7 1415 33.9
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 5.7e-147 526.6 1394 34.9
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.4e-145 521.9 1388 34.4
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 6.5e-143 513.1 1126 38.4
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 3.0e-140 504.2 1398 35.1
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.9e-139 501.5 1474 34.4
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 1.2e-133 482.3 1309 33.8
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 3.8e-127 460.7 1331 33.5
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 3.7e-122 444.1 1369 32.1
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.8e-116 425.2 1337 32.9
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 8.8e-116 422.9 1399 30.9
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 3.7e-114 417.5 1292 32.3
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 6.3e-114 416.8 1340 32.4
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 3.1e-113 414.5 1397 31.4
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 1.2e-112 412.5 1395 30.0
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 4.5e-112 410.6 733 42.8
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.2e-111 408.3 1420 29.9
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 1.1e-110 406.0 1428 31.1
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 7.2e-110 403.3 1369 32.1
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 8.0e-101 373.2 559 45.3
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.3e-98 363.6 1368 30.7
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 6.6e-95 353.6 1366 29.9
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 3.3e-86 324.7 804 34.8
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.1e-84 319.7 1431 29.6
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 1.5e-78 299.3 919 34.4
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 8.1e-77 293.5 919 31.3
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 3.1e-76 291.6 1205 28.0
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 8.9e-76 290.0 291 54.0
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.2e-73 281.6 1035 30.3
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.6e-69 269.2 687 34.9
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.4e-68 265.4 1227 29.5
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 3.1e-60 238.4 1120 29.7
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.2e-59 236.5 1030 27.8
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 2.0e-59 235.7 1402 26.1
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 4.4e-59 234.6 1465 25.8
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 8.4e-58 230.3 672 30.8
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.1e-57 229.9 685 31.8
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.1e-57 229.9 772 32.0
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 6.6e-55 220.7 666 32.4
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 1.3e-53 216.5 1360 26.7
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.4e-52 213.0 701 29.7
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 2.6e-51 208.8 727 30.9
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 2.1e-45 189.1 676 30.8
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 2.1e-45 189.1 1354 26.4
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 2.4e-44 185.7 1180 26.8
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 5.3e-44 184.5 1366 26.2
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.2e-43 183.3 1397 25.3
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.3e-39 169.9 390 33.8
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.5e-38 165.6 647 28.0
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 5.6e-38 164.5 1110 25.9
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.9e-34 151.4 307 34.5
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 6.5e-34 151.0 1326 25.5
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 3.9e-31 141.7 750 25.7
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 3.1e-28 132.1 1476 24.5
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 1.3e-26 126.7 1346 26.8
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 1.8e-23 116.3 1292 24.7
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 8.8e-23 114.0 360 31.7
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.2e-21 109.4 412 31.3
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.3e-21 107.8 614 27.2
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-20 107.1 453 29.1
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 2.0e-19 102.8 359 30.1
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 2.6e-19 102.4 641 26.5
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-17 97.1 1352 23.4
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 3.2e-17 95.5 643 26.6
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 2.3e-15 89.4 862 24.4
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.7e-14 84.7 181 37.0
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.2e-13 82.8 219 34.7
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-13 82.4 189 37.6
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 3.5e-11 75.5 274 29.6
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 4.5e-11 75.1 729 23.5
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 1.9e-09 69.7 730 23.2
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.2e-09 68.9 191 29.3
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.1e-08 66.2 46 67.4
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.0e-07 63.9 89 41.6
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 1.4e-07 63.5 117 44.4
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 3.9e-07 62.0 43 65.1
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 3.9e-07 62.0 43 65.1
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 1.1e-06 60.5 194 28.4
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 3.3e-06 58.9 87 37.9


User provided reference genes

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