Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 2324.3 1210 100.0
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 2036.9 1245 87.8
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 2015.4 1213 87.7
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1760.0 1221 76.9
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1721.8 1251 73.7
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1720.3 1226 75.3
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1693.7 1212 74.7
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1680.6 1252 73.2
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1672.1 1216 74.6
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1671.8 1219 74.0
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1662.5 1219 73.7
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1649.8 1211 73.7
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1645.6 1225 72.2
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1640.9 1217 72.8
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1639.8 1225 72.0
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1634.0 1218 72.9
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1633.2 1225 71.8
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1632.8 1227 72.0
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1631.7 1211 73.3
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1612.8 1222 70.8
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1600.9 1211 71.7
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1588.9 1211 70.9
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1587.0 1213 70.4
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1584.7 1220 70.8
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1569.7 1214 69.4
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1568.9 1208 71.0
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1568.1 1216 70.3
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1567.0 1215 68.4
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1564.7 1157 71.4
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1561.6 1214 69.4
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1561.2 1217 70.2
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1560.0 1218 69.4
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1552.7 1217 69.6
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1548.9 1218 69.0
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1548.5 1218 69.2
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1547.7 1168 71.0
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1545.0 1218 68.1
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1543.5 1237 67.0
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1541.9 1216 68.8
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1541.2 1209 68.5
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1539.6 1154 71.2
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1538.9 1218 68.6
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1538.1 1241 68.1
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1537.7 1218 68.5
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1535.4 1245 68.0
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1535.0 1259 67.4
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1535.0 1259 67.4
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1534.2 1259 67.4
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1529.6 1221 67.6
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1528.5 1232 66.9
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1523.8 1232 66.6
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1520.8 1213 67.5
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1516.9 1216 68.3
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1516.1 1232 66.4
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1510.0 1219 68.1
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1508.4 1209 68.0
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1508.0 1234 68.3
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1503.8 1212 67.8
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1503.8 1218 67.5
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1493.0 1220 67.2
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1493.0 1220 67.2
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1492.2 1199 68.1
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1488.8 1219 67.1
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1488.0 1187 68.6
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1487.6 1215 67.2
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1486.5 1216 66.9
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1482.2 1157 67.9
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1479.5 1222 66.4
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1478.4 1220 67.0
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1478.0 1419 60.3
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1475.3 1221 65.9
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1475.3 1206 67.2
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1475.3 1208 67.1
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1466.4 1178 68.4
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1458.0 1219 65.7
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1456.4 1350 61.3
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1455.7 1217 66.2
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1455.3 1217 65.3
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1449.5 1219 65.1
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1447.6 1208 66.1
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1437.6 1207 64.6
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1435.6 1227 63.9
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1432.9 1212 64.7
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1424.5 1140 67.2
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1415.2 1156 67.3
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1414.1 1189 65.1
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1389.8 1243 62.9
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1367.8 1228 62.3
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1365.5 1252 61.3
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1358.6 1152 65.9
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1328.5 1234 60.8
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1271.1 1031 67.1
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1268.8 1197 61.2
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1249.2 1208 58.7
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1212.2 1077 61.7
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1211.1 1191 59.3
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1202.6 1078 61.7
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1177.9 1219 56.8
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1168.7 1129 58.2
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1165.6 978 66.0
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1143.6 838 73.2
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1119.0 1202 54.3
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 2.7e-305 1052.4 1166 52.1
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 9.1e-293 1010.7 1237 50.6
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 1.1e-290 1003.8 1147 50.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.0e-288 995.7 767 71.4
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 6.8e-272 941.4 742 67.7
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.3e-270 934.9 675 72.1
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 6.4e-254 881.7 945 53.2
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.7e-249 865.5 668 67.7
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 5.1e-243 845.5 1260 43.1
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 6.6e-235 818.5 707 65.5
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.2e-231 807.7 640 66.9
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 6.4e-230 802.0 1249 41.6
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.9e-226 790.4 672 63.5
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 3.2e-221 773.1 696 61.8
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.1e-218 764.6 602 68.6
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 8.7e-211 738.4 620 64.0
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 7.4e-210 735.3 1165 40.8
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.0e-187 661.8 600 61.0
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 5.7e-186 656.0 1155 39.4
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.3e-176 622.9 525 64.0
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.0e-159 567.8 456 68.2
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.5e-158 562.8 457 68.1
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.4e-147 528.5 1513 30.7
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 1.8e-147 528.1 433 67.9
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 1.9e-136 491.5 386 71.2
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 6.0e-127 459.9 403 66.5
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 6.4e-113 413.3 424 54.7
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 2.5e-101 374.8 484 49.0
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 3.3e-101 374.4 364 59.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 7.6e-98 363.2 320 60.6
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.7e-89 335.5 280 62.9
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.9e-89 334.0 259 70.7
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-82 312.8 397 47.9
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 5.9e-82 310.5 280 60.0
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.3e-73 282.7 224 63.4
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 2.2e-68 265.4 240 62.5
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.0e-65 256.5 202 68.8
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-55 223.0 210 57.1
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.0e-55 220.3 208 57.2
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 4.0e-54 218.0 124 86.3
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.7e-54 217.2 208 56.2
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-53 216.1 204 57.4
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 3.7e-52 211.5 180 59.4
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 9.4e-48 196.8 181 60.2
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 6.1e-47 194.1 172 64.0
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.3e-44 184.1 134 64.9
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.1e-43 180.3 130 65.4
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 1.3e-41 176.4 130 64.6
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.9e-41 175.3 127 64.6
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.5e-41 174.1 280 41.8
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-39 169.5 138 70.3
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-31 141.7 111 60.4
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 6.1e-31 141.0 106 62.3
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.8e-26 124.0 135 50.4
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.9e-24 119.4 99 72.7
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.3e-24 118.6 99 72.7
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.6e-23 115.2 234 36.8
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 2.2e-20 105.9 161 45.3
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.4e-19 102.4 64 73.4
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.3e-17 95.9 93 55.9
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 1.9e-16 92.8 57 84.2
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 4.7e-15 88.2 101 58.4
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.1e-14 85.5 252 27.4
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 7.5e-13 80.9 110 51.8
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 6.4e-12 77.8 123 36.6
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 2.4e-11 75.9 83 49.4
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 4.1e-11 75.1 132 43.9
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 2.1e-10 72.8 148 39.2
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 1.9e-08 66.2 96 56.2
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 2.5e-08 65.9 63 66.7
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 9.5e-08 63.9 67 62.7
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 1.6e-07 63.2 63 65.1
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 1.6e-07 63.2 63 65.1
Gohir.D05G040350 Gossypium hirsutum HOM05D004065 ORTHO05D020362 3.6e-07 62.0 62 64.5
SHI22584 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-06 60.5 124 41.9
TAR636G1681 Trochodendron aralioides HOM05D000172 ORTHO05D000273 8.9e-06 57.4 120 35.0


User provided reference genes

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