Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 2.4e-27 124.8 64 100.0
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 7.3e-24 113.2 64 90.6
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 1.2e-18 95.9 64 73.4
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 3.9e-17 90.9 63 71.4
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 6.6e-17 90.1 59 72.9
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 6.6e-17 90.1 64 70.3
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 6.6e-17 90.1 63 69.8
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 8.6e-17 89.7 59 76.3
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.1e-16 89.4 63 69.8
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.1e-16 89.4 58 74.1
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 1.1e-16 89.4 58 74.1
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 1.9e-16 88.6 64 70.3
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 1.9e-16 88.6 64 70.3
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 2.5e-16 88.2 63 71.4
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 2.5e-16 88.2 64 64.1
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 3.3e-16 87.8 64 68.8
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 4.3e-16 87.4 59 71.2
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 4.3e-16 87.4 62 69.4
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 5.6e-16 87.0 56 69.6
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 7.3e-16 86.7 64 62.5
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 7.3e-16 86.7 52 76.9
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 9.5e-16 86.3 58 74.1
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 1.2e-15 85.9 63 71.4
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.6e-15 85.5 64 68.8
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 1.6e-15 85.5 54 79.6
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 1.6e-15 85.5 58 67.2
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 2.1e-15 85.1 59 66.1
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 2.1e-15 85.1 59 66.1
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 2.8e-15 84.7 58 72.4
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 2.8e-15 84.7 57 71.9
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 2.8e-15 84.7 62 67.7
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 3.6e-15 84.3 64 65.6
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 6.2e-15 83.6 64 67.2
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 6.2e-15 83.6 56 69.6
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 8.0e-15 83.2 52 73.1
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 3.1e-14 81.3 62 67.7
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 3.1e-14 81.3 52 71.2
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 3.1e-14 81.3 52 71.2
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 3.1e-14 81.3 53 75.5
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 3.1e-14 81.3 64 65.6
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 4.0e-14 80.9 57 64.9
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 8.9e-14 79.7 62 62.9
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 8.9e-14 79.7 58 62.1
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 2.0e-13 78.6 63 63.5
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 2.6e-13 78.2 64 64.1
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 4.4e-13 77.4 52 71.2
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 5.8e-13 77.0 58 67.2
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 5.8e-13 77.0 57 64.9
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 7.5e-13 76.6 49 69.4
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 9.8e-13 76.3 51 68.6
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 9.8e-13 76.3 47 70.2
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 3.7e-12 74.3 47 78.7
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 4.9e-12 73.9 62 62.9
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 4.9e-12 73.9 60 65.0
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 4.9e-12 73.9 50 70.0
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 6.4e-12 73.6 63 63.5
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 6.4e-12 73.6 47 66.0
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 6.4e-12 73.6 56 64.3
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 6.4e-12 73.6 43 76.7
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 8.3e-12 73.2 60 65.0
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 8.3e-12 73.2 57 64.9
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 1.9e-11 72.0 62 59.7
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 1.9e-11 72.0 62 59.7
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 1.9e-11 72.0 62 59.7
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 1.9e-11 72.0 62 59.7
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 1.9e-11 72.0 62 59.7
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 1.9e-11 72.0 62 58.1
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 1.9e-11 72.0 43 79.1
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 2.4e-11 71.6 60 60.0
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 2.4e-11 71.6 59 62.7
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 4.1e-11 70.9 49 73.5
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 5.4e-11 70.5 89 49.4
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 5.4e-11 70.5 43 72.1
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 7.0e-11 70.1 44 72.7
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 9.2e-11 69.7 60 65.0
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 9.2e-11 69.7 63 57.1
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 9.2e-11 69.7 63 58.7
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 9.2e-11 69.7 63 58.7
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 9.2e-11 69.7 63 57.1
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 7.8e-10 66.6 43 67.4
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 1.3e-09 65.9 42 66.7
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 2.3e-09 65.1 45 60.0
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 2.5e-08 61.6 58 56.9
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 4.3e-08 60.8 48 56.2


User provided reference genes

Program Settings