Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 6.5e-120 434.1 225 100.0
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.6e-113 412.9 225 93.8
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.2e-110 403.3 225 89.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.1e-106 388.7 226 90.3
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 5.7e-100 367.9 227 83.3
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 9.8e-100 367.1 225 85.3
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 8.6e-96 354.0 226 81.4
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.9e-95 352.8 212 84.0
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 2.5e-95 352.4 236 79.2
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 3.3e-95 352.1 210 84.8
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 4.3e-95 351.7 225 79.6
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 4.3e-95 351.7 227 84.1
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.2e-94 350.1 234 77.8
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.2e-94 350.1 233 77.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 4.7e-94 348.2 203 85.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 6.2e-94 347.8 226 81.9
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.0e-93 347.1 226 79.6
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.4e-93 346.7 211 82.0
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 3.1e-93 345.5 230 79.6
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 4.0e-93 345.1 231 77.5
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.0e-93 345.1 231 77.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.2e-93 344.7 231 77.5
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.2e-93 344.7 231 77.5
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 8.9e-93 344.0 208 80.8
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-92 342.8 231 77.1
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 3.4e-92 342.0 230 78.7
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.4e-92 341.7 228 75.4
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 4.4e-92 341.7 231 77.1
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.8e-92 341.3 221 78.7
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 5.8e-92 341.3 200 83.5
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 9.8e-92 340.5 228 78.5
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.7e-91 339.7 208 79.8
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.7e-91 339.7 221 78.3
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.7e-91 339.7 221 78.3
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.7e-91 339.7 229 80.8
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.9e-91 339.0 233 76.0
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.9e-91 339.0 233 76.0
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 6.4e-91 337.8 208 78.4
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 1.1e-90 337.0 211 82.0
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 1.1e-90 337.0 211 82.0
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.1e-90 337.0 230 76.5
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.9e-90 336.3 211 81.5
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.9e-90 336.3 228 78.9
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.9e-90 336.3 228 77.2
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.4e-90 335.9 210 80.5
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 4.1e-90 335.1 208 79.8
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.1e-90 335.1 210 79.5
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.1e-90 335.1 228 77.2
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 7.0e-90 334.3 225 77.3
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 9.2e-90 334.0 228 78.5
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.2e-89 333.6 235 79.1
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.2e-89 333.6 228 78.1
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.0e-89 332.8 228 78.9
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 6.0e-89 331.3 211 79.1
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.0e-88 330.5 211 78.7
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.7e-88 329.7 208 77.4
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.3e-88 329.3 214 76.2
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 3.9e-88 328.6 232 75.0
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 6.6e-88 327.8 235 77.4
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.1e-87 327.0 213 77.0
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.9e-87 326.2 202 79.7
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.9e-87 326.2 223 75.3
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 4.3e-87 325.1 210 77.1
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.1e-86 322.8 212 76.4
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.6e-86 322.0 210 76.7
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 8.1e-86 320.9 209 75.6
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.8e-85 319.7 230 73.5
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.8e-85 319.7 210 77.1
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 2.3e-85 319.3 208 79.3
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.2e-84 317.0 237 72.6
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.5e-84 316.6 209 75.6
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 7.5e-84 314.3 231 72.7
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.7e-83 313.2 208 75.5
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.2e-83 312.8 227 72.7
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 2.9e-83 312.4 211 74.9
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.4e-82 310.1 208 76.4
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 7.1e-82 307.8 230 73.0
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.6e-81 306.6 230 68.3
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.7e-81 305.8 204 74.5
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 3.5e-81 305.4 225 74.2
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 7.8e-81 304.3 232 73.7
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 7.8e-81 304.3 224 70.5
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.7e-80 303.1 202 72.8
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 3.9e-80 302.0 225 73.8
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 5.2e-77 291.6 225 68.9
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.9e-77 290.8 220 70.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.6e-76 289.3 228 66.2
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 4.4e-76 288.5 205 69.8
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 9.9e-76 287.3 205 69.3
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 6.4e-75 284.6 200 71.0
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.4e-74 283.5 230 69.1
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.9e-74 283.1 227 66.1
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 4.1e-74 282.0 205 71.7
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 7.1e-74 281.2 225 64.4
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.1e-74 281.2 201 69.2
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 7.1e-74 281.2 195 73.3
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 7.1e-74 281.2 228 65.4
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.2e-73 280.4 205 71.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.2e-73 280.4 230 68.7
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 2.7e-73 279.3 217 71.9
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 6.0e-73 278.1 219 64.8
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.0e-72 277.3 217 71.4
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.3e-72 276.9 230 67.0
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-72 276.9 230 67.0
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.3e-72 276.9 230 67.0
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 3.0e-72 275.8 230 67.0
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 3.0e-72 275.8 230 67.0
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.0e-72 275.8 205 70.7
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 8.6e-72 274.2 230 67.0
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.1e-71 273.9 231 65.8
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.1e-71 273.9 231 65.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.9e-71 273.1 230 66.1
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.5e-71 272.7 230 66.1
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.3e-71 271.9 230 66.1
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.2e-70 270.4 207 66.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.6e-70 270.0 221 63.3
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 4.7e-70 268.5 194 71.6
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 8.1e-70 267.7 227 64.8
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.5e-68 263.5 202 65.8
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 4.9e-67 258.5 220 60.0
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.9e-66 256.5 216 64.4
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.2e-65 253.8 204 64.2
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 6.6e-64 248.1 218 59.2
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.1e-63 247.3 230 65.7
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 7.3e-63 244.6 220 62.3
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 9.6e-63 244.2 143 83.9
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.1e-58 230.7 165 72.1
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 8.7e-56 221.1 190 66.3
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.5e-55 220.3 199 55.8
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.4e-55 218.0 120 88.3
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 5.8e-52 208.4 221 54.8
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.7e-51 206.8 166 63.3
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 1.8e-45 186.8 139 73.4
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 3.4e-44 182.6 121 71.1
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.0e-43 181.0 204 52.9
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.2e-42 175.6 104 81.7
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 3.5e-41 172.6 105 74.3
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 8.7e-40 167.9 102 79.4
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 2.2e-19 100.1 62 75.8
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 2.0e-15 87.0 94 51.1
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.8e-06 56.6 138 32.6


User provided reference genes

Program Settings