Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.6e-115 418.7 209 100.0
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 8.8e-111 403.7 209 95.7
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 6.3e-101 370.9 209 87.6
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 9.5e-81 303.9 209 71.3
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.2e-80 303.5 208 72.6
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.2e-80 303.5 208 72.6
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.2e-80 303.5 208 72.6
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 2.8e-80 302.4 209 70.8
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 1.0e-79 300.4 208 71.2
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 1.0e-79 300.4 208 72.1
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 1.8e-79 299.7 210 70.0
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 3.0e-79 298.9 207 70.0
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 5.2e-79 298.1 209 77.0
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 6.8e-79 297.7 199 72.9
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 2.4e-76 289.3 213 68.5
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.1e-76 288.5 213 68.5
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.1e-76 288.5 213 68.5
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-75 287.0 213 68.1
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.6e-75 286.6 215 69.8
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.0e-75 286.2 213 68.1
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.5e-75 285.4 207 70.0
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.3e-74 283.5 207 69.6
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 2.3e-74 282.7 198 69.7
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.3e-74 282.7 207 69.6
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 2.3e-74 282.7 213 66.7
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 2.3e-74 282.7 209 66.5
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 2.9e-74 282.3 194 73.2
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 3.9e-74 282.0 212 67.0
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 5.0e-74 281.6 212 67.5
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 6.6e-74 281.2 212 67.0
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 1.1e-73 280.4 209 67.5
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 1.9e-73 279.6 212 66.5
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 3.3e-73 278.9 195 72.3
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 3.3e-73 278.9 209 66.5
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 4.3e-73 278.5 213 65.3
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 4.3e-73 278.5 212 66.5
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 7.3e-73 277.7 209 66.5
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 7.3e-73 277.7 209 67.0
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 7.3e-73 277.7 212 66.5
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 1.2e-72 276.9 212 66.0
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 1.2e-72 276.9 209 67.0
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 1.6e-72 276.6 205 67.8
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 2.1e-72 276.2 205 67.8
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 2.1e-72 276.2 213 65.7
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 2.1e-72 276.2 207 67.1
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 2.8e-72 275.8 209 65.1
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 3.6e-72 275.4 209 66.5
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 3.6e-72 275.4 212 63.2
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 4.7e-72 275.0 212 65.6
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 8.0e-72 274.2 205 67.3
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 1.0e-71 273.9 210 67.1
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.4e-71 273.5 212 65.1
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.4e-71 273.5 205 66.8
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 3.1e-71 272.3 212 66.0
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 8.9e-71 270.8 213 64.8
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 1.2e-70 270.4 208 64.9
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 2.0e-70 269.6 212 63.2
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.0e-70 269.6 206 67.5
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.6e-70 269.2 206 67.0
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 2.6e-70 269.2 212 62.3
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 2.6e-70 269.2 209 65.1
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 7.5e-70 267.7 205 65.9
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 7.5e-70 267.7 213 63.8
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 9.8e-70 267.3 212 62.3
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 9.8e-70 267.3 212 63.2
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 1.3e-69 266.9 211 64.0
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 6.4e-69 264.6 209 63.6
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 6.4e-69 264.6 196 67.3
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 1.1e-68 263.8 215 62.3
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 2.4e-68 262.7 212 63.2
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 3.2e-68 262.3 198 68.2
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 4.1e-68 261.9 211 63.0
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 4.1e-68 261.9 210 63.3
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 7.0e-68 261.2 211 62.1
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 9.2e-68 260.8 212 63.7
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.2e-67 260.4 211 63.0
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 1.6e-67 260.0 189 68.3
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 2.0e-67 259.6 228 60.5
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 2.0e-67 259.6 211 61.6
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 2.0e-67 259.6 212 63.7
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 2.0e-67 259.6 212 63.7
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 2.0e-67 259.6 212 63.7
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 3.5e-67 258.8 211 62.1
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 6.0e-67 258.1 211 62.1
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 6.0e-67 258.1 204 63.2
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 7.8e-67 257.7 204 63.2
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 1.3e-66 256.9 215 63.3
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 1.3e-66 256.9 212 61.8
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.7e-66 256.5 211 61.1
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 1.7e-66 256.5 210 65.2
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 2.3e-66 256.1 211 61.6
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.5e-65 253.4 212 62.7
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 1.9e-65 253.1 214 62.1
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 4.3e-65 251.9 192 65.6
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 7.3e-65 251.1 205 62.0
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 2.8e-64 249.2 208 61.1
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 2.8e-64 249.2 205 62.0
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 4.9e-61 238.4 181 65.7
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 6.4e-61 238.0 192 62.5
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.4e-60 236.1 202 59.9
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.4e-60 236.1 236 54.7
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 5.4e-60 235.0 208 56.7
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.6e-59 233.4 206 58.7
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 1.7e-58 229.9 215 56.7
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 3.3e-57 225.7 204 60.8
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.8e-56 222.6 154 70.1
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.4e-55 220.3 209 56.5
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 3.1e-55 219.2 175 60.0
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.2e-54 217.2 184 59.8
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 3.7e-53 212.2 144 70.8
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 5.6e-49 198.4 166 55.4
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.3e-42 177.2 207 46.4
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.9e-37 158.7 113 68.1
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 6.2e-32 141.7 135 57.8
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 6.9e-31 138.3 79 75.9
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 4.5e-30 135.6 187 37.4
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 4.6e-27 125.6 166 39.8
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.9e-25 120.2 114 48.2
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 2.8e-24 116.3 194 40.2
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 4.0e-23 112.5 63 77.8
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 1.4e-20 104.0 105 49.5
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 8.7e-18 94.7 195 33.8
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.8e-15 87.0 88 54.5
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 4.0e-15 85.9 50 72.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 3.4e-14 82.8 76 48.7
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 3.2e-12 76.3 93 45.2
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 3.9e-10 69.3 87 44.8
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 1.3e-08 64.3 77 45.5
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 2.2e-08 63.5 148 31.8
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 2.8e-08 63.2 82 43.9
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 2.6e-06 56.6 64 51.6


User provided reference genes

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