Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.2e-41 171.8 81 100.0
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 2.7e-31 138.3 80 83.8
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 5.9e-31 137.1 81 77.8
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.0e-27 126.3 111 60.4
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.3e-17 92.8 79 60.8
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 6.4e-17 90.5 77 59.7
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.9e-16 89.0 69 62.3
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 4.1e-16 87.8 83 54.2
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 5.4e-16 87.4 67 56.7
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 5.4e-16 87.4 67 56.7
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.2e-15 86.3 68 55.9
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 2.7e-15 85.1 67 61.2
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.0e-15 84.0 68 55.9
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 6.0e-15 84.0 82 56.1
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 6.0e-15 84.0 82 56.1
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 6.0e-15 84.0 68 54.4
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 6.0e-15 84.0 70 60.0
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.7e-14 82.4 70 58.6
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 2.3e-14 82.0 67 59.7
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 3.0e-14 81.6 70 58.6
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 3.9e-14 81.3 75 54.7
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.0e-14 80.9 70 57.1
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 5.0e-14 80.9 70 57.1
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 6.6e-14 80.5 69 58.0
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 8.6e-14 80.1 68 58.8
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.1e-13 79.7 83 50.6
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.5e-13 79.3 70 55.7
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.9e-13 79.0 71 53.5
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 2.5e-13 78.6 72 52.8
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.5e-13 78.6 67 55.2
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.5e-13 78.6 70 57.1
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 3.3e-13 78.2 82 43.9
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 4.3e-13 77.8 78 44.9
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 4.3e-13 77.8 72 51.4
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 4.3e-13 77.8 72 51.4
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.3e-13 77.8 71 52.1
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 5.6e-13 77.4 72 50.0
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 9.5e-13 76.6 84 51.2
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 9.5e-13 76.6 79 50.6
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 1.2e-12 76.3 84 56.0
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 1.2e-12 76.3 70 45.7
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.2e-12 76.3 75 50.7
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.2e-12 76.3 69 49.3
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 3.6e-12 74.7 72 50.0
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 3.6e-12 74.7 76 51.3
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 4.7e-12 74.3 73 52.1
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.7e-12 74.3 74 50.0
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.7e-12 74.3 74 50.0
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 4.7e-12 74.3 74 50.0
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.2e-12 73.9 75 53.3
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 6.2e-12 73.9 75 53.3
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 6.2e-12 73.9 69 52.2
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 6.2e-12 73.9 73 54.8
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 6.2e-12 73.9 75 49.3
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 8.1e-12 73.6 69 47.8
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.1e-11 73.2 76 52.6
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.4e-11 72.8 78 53.8
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.8e-11 72.4 64 53.1
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 3.1e-11 71.6 69 47.8
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.1e-11 71.6 77 54.5
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.1e-11 71.6 69 49.3
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 3.1e-11 71.6 83 49.4
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.0e-11 71.2 68 51.5
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 5.2e-11 70.9 74 47.3
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 8.9e-11 70.1 80 41.2
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.2e-10 69.7 74 51.4
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-10 69.3 71 53.5
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.0e-10 68.9 71 50.7
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.6e-10 68.6 68 48.5
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.4e-10 68.2 81 45.7
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 3.4e-10 68.2 82 45.1
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 4.4e-10 67.8 81 44.4
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 5.8e-10 67.4 70 48.6
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.5e-10 67.0 68 50.0
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 7.5e-10 67.0 74 47.3
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 7.5e-10 67.0 69 46.4
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 7.5e-10 67.0 68 50.0
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.3e-09 66.2 76 44.7
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.3e-09 66.2 76 47.4
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.2e-09 65.5 68 45.6
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.2e-09 65.5 73 45.2
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 2.2e-09 65.5 53 54.7
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 2.9e-09 65.1 69 43.5
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 2.9e-09 65.1 80 46.2
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.7e-09 64.7 55 50.9
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 3.7e-09 64.7 55 50.9
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 3.7e-09 64.7 76 43.4
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.9e-09 64.3 77 41.6
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 6.4e-09 63.9 72 47.2
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 6.4e-09 63.9 74 47.3
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 8.3e-09 63.5 74 43.2
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.1e-08 63.2 43 55.8
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 1.1e-08 63.2 76 42.1
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.4e-08 62.0 74 44.6
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 2.4e-08 62.0 75 44.0
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 2.4e-08 62.0 77 44.2
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 7.1e-08 60.5 71 43.7
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 9.2e-08 60.1 54 48.1
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 9.2e-08 60.1 57 45.6
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 9.2e-08 60.1 67 41.8
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 9.2e-08 60.1 67 41.8
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.6e-07 59.3 54 48.1
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 3.5e-07 58.2 72 38.9
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 3.5e-07 58.2 66 45.5
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 4.6e-07 57.8 42 50.0
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.6e-07 57.8 39 53.8
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 4.6e-07 57.8 79 38.0
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 1.7e-06 55.8 40 52.5
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 3.0e-06 55.1 66 47.0
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 3.9e-06 54.7 76 39.5
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 3.9e-06 54.7 76 44.7
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 3.9e-06 54.7 56 42.9
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 6.6e-06 53.9 74 39.2
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 8.6e-06 53.5 103 36.9


User provided reference genes

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