Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G193950 Populus trichocarpa HOM05D002404 ORTHO05D332866 5.1e-34 147.1 72 100.0
AL1G17520 Arabidopsis lyrata HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
AT1G07370 Arabidopsis thaliana HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
BcaC07g42007 Brassica carinata HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
BcaC07g42462 Brassica carinata HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
A05p15830 Brassica napus HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
C04p21270 Brassica napus HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
C08p50640 Brassica napus HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
BolC4t23656H Brassica oleracea HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
BolC8t52592H Brassica oleracea HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
BraA05t20496Z Brassica rapa HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
BraA09t41985Z Brassica rapa HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
CARHR007080 Cardamine hirsuta HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
Sp1g06120 Schrenkiella parvula HOM05D002404 ORTHO05D003647 4.1e-07 57.8 38 68.4
PGR091G0001 Punica granatum HOM05D002404 ORTHO05D029955 6.9e-07 57.0 43 60.5
Thhalv10008509m.g Eutrema salsugineum HOM05D002404 ORTHO05D003647 9.1e-07 56.6 38 65.8
QL93p0331_0124 Quercus lobata HOM05D002404 ORTHO05D029955 1.2e-06 56.2 41 63.4
Atru.chr3.4053 Acer truncatum HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Aa31LG5G6890 Aethionema arabicum HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
AL4G24290 Arabidopsis lyrata HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
AT2G29570 Arabidopsis thaliana HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
BcaB02g10263 Brassica carinata HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
CSS0001422 Camellia sinensis var. sinensis HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
CSS0025335 Camellia sinensis var. sinensis HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Carub.0004s1063 Capsella rubella HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
CARHR122910 Cardamine hirsuta HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Thhalv10017099m.g Eutrema salsugineum HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Gohir.A03G048100 Gossypium hirsutum HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Gohir.D03G118900 Gossypium hirsutum HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Gorai.003G125300 Gossypium raimondii HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Rhsim03G0139300 Rhododendron simsii HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 68.4
RcHm_v2.0_Chr5g0067981 Rosa chinensis HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Sp4g12300 Schrenkiella parvula HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Hund04899 Selenicereus undatus HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
THA.LOC104815801 Tarenaya hassleriana HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
THA.LOC104826301 Tarenaya hassleriana HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
TAR633G0461 Trochodendron aralioides HOM05D002404 ORTHO05D003647 2.0e-06 55.5 38 65.8
Ah.14g082670 Amaranthus hybridus HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
CAN.G394.99 Capsicum annuum HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
DCAR_007406 Daucus carota HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
FvH4_3g37710 Fragaria vesca HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
FAN11G3986 Fragaria x ananassa HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
FAN16G1397 Fragaria x ananassa HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
FAN21G0265 Fragaria x ananassa HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
FAN25G0398 Fragaria x ananassa HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
Lsat_1_v5_gn_8_12580 Lactuca sativa HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
Oeu035018.1 Olea europaea HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
Phvul.006G137800 Phaseolus vulgaris HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
QL08p062470 Quercus lobata HOM05D002404 ORTHO05D003647 2.6e-06 55.1 48 58.3
SEGI_13348 Sequoiadendron giganteum HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
SGA_v2.0_scaffold77G25326 Striga asiatica HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
SGA_v2.0_scaffold95G28680 Striga asiatica HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
TPR.G15751 Trifolium pratense HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
VMungo0540G1433 Vigna mungo HOM05D002404 ORTHO05D003647 2.6e-06 55.1 38 65.8
Aqoxy1G00741 Aquilegia oxysepala HOM05D002404 ORTHO05D003647 3.4e-06 54.7 38 63.2
CDE02G0969 Ceratophyllum demersum HOM05D002404 ORTHO05D003647 3.4e-06 54.7 44 59.1
Haze_24235 Corylus avellana HOM05D002404 ORTHO05D003647 3.4e-06 54.7 38 63.2
FvH4_6g24870 Fragaria vesca HOM05D002404 ORTHO05D003647 3.4e-06 54.7 38 63.2
FAN05G4258 Fragaria x ananassa HOM05D002404 ORTHO05D003647 3.4e-06 54.7 38 63.2
FAN14G3520 Fragaria x ananassa HOM05D002404 ORTHO05D003647 3.4e-06 54.7 38 63.2
ATR0680G321 Amborella trichopoda HOM05D002404 ORTHO05D003647 4.5e-06 54.3 40 62.5
Cfa011630 Carpinus fangiana HOM05D002404 ORTHO05D003647 4.5e-06 54.3 38 63.2
ECA233G2070 Erigeron canadensis HOM05D002404 ORTHO05D003647 4.5e-06 54.3 38 65.8
HanXRQChr08g0222181 Helianthus annuus HOM05D002404 ORTHO05D003647 4.5e-06 54.3 38 65.8
MBI05_g36637_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D003647 4.5e-06 54.3 40 62.5
MD03G1078300 Malus domestica HOM05D002404 ORTHO05D003647 4.5e-06 54.3 38 63.2
MD11G1083000 Malus domestica HOM05D002404 ORTHO05D003647 4.5e-06 54.3 38 63.2
MD13G1227300 Malus domestica HOM05D002404 ORTHO05D003647 4.5e-06 54.3 38 63.2
Mapoly0075s0032 Marchantia polymorpha HOM05D002404 ORTHO05D003647 4.5e-06 54.3 40 62.5
Nitab4.5_0011134g0030 Nicotiana tabacum HOM05D002404 ORTHO05D003647 4.5e-06 54.3 38 63.2
SHI38242 Sapria himalayana HOM05D002404 ORTHO05D003647 4.5e-06 54.3 40 62.5
Sc12g0001020 Simmondsia chinensis HOM05D002404 ORTHO05D003647 4.5e-06 54.3 38 63.2
TWI75G1109 Tripterygium wilfordii HOM05D002404 ORTHO05D003647 4.5e-06 54.3 38 63.2
AagrBONN_evm.TU.Sc2ySwM_368.185 Anthoceros agrestis HOM05D002404 ORTHO05D003647 5.9e-06 53.9 40 60.0
MBI14_g32930_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D003647 5.9e-06 53.9 40 62.5
Oeu032673.1 Olea europaea HOM05D002404 ORTHO05D003647 5.9e-06 53.9 40 62.5
Potri.001G247700 Populus trichocarpa HOM05D002404 ORTHO05D003647 5.9e-06 53.9 38 63.2
Potri.009G040900 Populus trichocarpa HOM05D002404 ORTHO05D003647 5.9e-06 53.9 38 63.2
Sabra16G0150400 Salix brachista HOM05D002404 ORTHO05D003647 5.9e-06 53.9 38 63.2
Nn2g13583 Nelumbo nucifera HOM05D002404 ORTHO05D029955 7.7e-06 53.5 45 57.8


User provided reference genes

Program Settings