Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 0.0e+00 1325.5 693 100.0
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 0.0e+00 1088.9 693 83.5
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 4.4e-292 1007.7 691 79.6
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 3.1e-229 798.9 689 65.9
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 4.1e-221 771.9 702 61.5
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 3.7e-214 748.8 713 60.0
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.1e-213 747.3 697 63.7
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 5.3e-213 745.0 699 62.7
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.5e-212 741.9 684 61.3
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 1.3e-211 740.3 652 63.0
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.2e-211 739.6 684 61.0
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 6.5e-211 738.0 711 60.1
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-209 733.8 660 62.3
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.6e-209 733.4 694 62.0
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 6.1e-209 731.5 700 62.1
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 8.0e-209 731.1 703 60.7
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.6e-207 726.1 658 62.8
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 2.2e-206 723.0 711 61.0
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 2.2e-206 723.0 711 61.0
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 3.7e-206 722.2 699 59.8
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 4.1e-205 718.8 697 61.1
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.0e-204 716.5 732 57.1
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 7.7e-204 714.5 702 59.4
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.0e-203 714.1 659 60.8
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 8.5e-203 711.1 659 60.7
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.2e-201 707.2 646 61.9
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 1.5e-199 700.3 688 60.6
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.8e-198 696.0 689 59.2
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 2.9e-195 686.0 713 59.7
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 2.9e-195 686.0 707 57.7
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 4.0e-192 675.6 689 57.6
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 6.8e-192 674.9 709 55.7
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 8.3e-190 667.9 681 58.1
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 2.7e-188 662.9 664 58.9
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.8e-187 659.1 674 58.5
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 8.6e-187 657.9 675 57.3
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.2e-185 654.1 700 56.7
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 6.1e-185 651.7 672 56.8
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 1.2e-183 647.5 745 54.8
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 3.7e-182 642.5 666 59.0
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.4e-181 639.8 681 57.0
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 7.0e-181 638.3 727 53.6
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 5.9e-180 635.2 700 56.1
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 3.9e-179 632.5 709 54.4
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 9.5e-178 627.9 700 54.7
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 4.0e-176 622.5 707 54.6
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 4.4e-175 619.0 681 55.4
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 7.5e-175 618.2 660 56.1
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.7e-174 617.1 597 59.8
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 2.2e-174 616.7 705 54.3
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 3.7e-174 615.9 680 55.1
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.6e-172 610.5 704 55.1
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.3e-171 607.4 595 60.7
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 4.3e-170 602.4 611 57.3
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.2e-169 600.9 691 54.1
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.2e-167 594.3 690 53.3
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 5.8e-167 592.0 686 53.1
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 7.5e-167 591.7 663 53.5
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.7e-166 590.5 662 54.1
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 8.3e-166 588.2 708 52.0
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 4.1e-165 585.9 703 50.8
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 5.4e-165 585.5 700 51.7
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 9.2e-165 584.7 663 53.4
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.3e-162 576.2 659 52.4
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 3.1e-160 569.7 724 51.0
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 9.9e-159 564.7 688 50.3
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.3e-158 564.3 686 51.9
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.0e-155 554.7 728 50.4
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 3.9e-155 552.7 553 59.3
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 8.6e-155 551.6 574 55.6
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 1.5e-154 550.8 557 56.9
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.2e-153 547.7 676 51.8
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 7.6e-151 538.5 673 51.7
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.7e-150 537.3 663 51.3
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 3.8e-150 536.2 692 50.1
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 4.3e-146 522.7 774 44.4
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.8e-145 520.0 686 48.5
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 6.2e-145 518.8 711 49.8
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.5e-143 514.2 650 50.5
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 4.4e-143 512.7 587 53.0
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 7.6e-143 511.9 589 52.5
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 6.4e-142 508.8 622 50.8
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 2.7e-140 503.4 665 49.5
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 3.9e-139 499.6 671 49.3
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.1e-138 498.0 667 49.0
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.9e-130 470.7 660 47.3
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 3.1e-128 463.4 427 62.1
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 3.1e-128 463.4 706 47.0
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 2.2e-126 457.2 683 46.4
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 6.5e-126 455.7 648 46.0
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 3.5e-124 449.9 668 45.2
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.8e-123 447.6 654 45.7
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 3.9e-123 446.4 686 47.7
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 2.5e-122 443.7 655 45.5
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 8.2e-121 438.7 676 46.4
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 1.7e-118 431.0 641 46.0
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 4.2e-117 426.4 667 45.6
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 9.3e-117 425.2 649 45.5
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 9.3e-117 425.2 649 45.5
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 1.0e-115 421.8 507 51.5
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.8e-115 421.0 613 45.7
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 8.7e-115 418.7 550 49.3
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.8e-112 411.0 660 45.9
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 7.2e-109 399.1 601 43.6
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.6e-108 397.9 497 52.5
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.0e-107 395.2 619 44.4
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 1.4e-107 394.8 566 45.6
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 5.3e-104 382.9 724 42.3
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-102 378.3 496 48.6
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.2e-100 371.7 674 42.1
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 1.5e-95 354.8 603 43.8
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 9.4e-93 345.5 293 61.8
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 5.0e-86 323.2 609 41.7
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 4.8e-81 306.6 497 43.3
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 4.1e-80 303.5 189 79.4
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.3e-78 298.5 494 42.7
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 4.0e-75 287.0 164 91.5
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 9.1e-72 275.8 264 57.6
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 5.0e-62 243.4 202 59.9
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 3.6e-52 210.7 283 43.8
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.1e-51 209.1 216 50.5
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.4e-51 208.8 150 72.7
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 1.8e-51 208.4 217 57.6
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 8.9e-51 206.1 456 35.5
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 2.8e-44 184.5 201 45.3
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 8.9e-43 179.5 115 75.7
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-41 175.6 165 61.8
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 4.1e-40 170.6 137 65.7
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 7.8e-39 166.4 164 61.0
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 6.2e-36 156.8 150 58.7
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.1e-35 156.0 232 42.2
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 1.1e-35 156.0 315 39.7
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 6.8e-35 153.3 139 61.9
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 1.2e-34 152.5 400 36.5
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 4.8e-28 130.6 87 75.9
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 9.3e-24 116.3 447 28.4
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.2e-23 115.9 74 68.9
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 6.6e-22 110.2 192 42.7
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.5e-18 99.0 127 50.4
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 4.6e-15 87.4 59 72.9
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 6.0e-15 87.0 73 54.8
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.0e-14 84.7 72 55.6
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 4.3e-13 80.9 126 46.8
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.3e-12 79.3 65 63.1
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 4.5e-10 70.9 42 76.2
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 1.7e-09 68.9 87 39.1
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 4.2e-08 64.3 55 52.7
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 5.5e-08 63.9 38 78.9
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 7.1e-08 63.5 55 58.2
MD12G1168400 Malus domestica HOM05D004806 ORTHO05D005397 2.1e-07 62.0 28 100.0
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 2.3e-06 58.5 97 41.2


User provided reference genes

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