Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G192300 Populus trichocarpa HOM05D007615 ORTHO05D009643 7.1e-102 374.0 199 100.0
Sabra10G0147900 Salix brachista HOM05D007615 ORTHO05D009643 3.4e-96 355.1 199 93.5
CiPaw.01G296100 Carya illinoinensis HOM05D007615 ORTHO05D009643 3.2e-70 268.9 200 69.0
TWI53G1973 Tripterygium wilfordii HOM05D007615 ORTHO05D009643 3.9e-68 261.9 197 68.0
QL08p062684 Quercus lobata HOM05D007615 ORTHO05D009643 2.8e-66 255.8 197 68.0
Manes.07G125900 Manihot esculenta HOM05D007615 ORTHO05D009643 4.1e-65 251.9 155 82.6
TAR636G2052 Trochodendron aralioides HOM05D007615 ORTHO05D009643 4.5e-64 248.4 199 64.8
TAR636G3510 Trochodendron aralioides HOM05D007615 ORTHO05D009643 5.0e-63 245.0 199 64.8
Atru.chr12.235 Acer truncatum HOM05D007615 ORTHO05D009643 6.5e-63 244.6 199 65.3
CANSAT56G1044 Cannabis sativa HOM05D007615 ORTHO05D009643 1.2e-61 240.4 197 62.4
Eucgr.K02662 Eucalyptus grandis HOM05D007615 ORTHO05D009643 1.6e-61 240.0 194 62.4
Haze_17188 Corylus avellana HOM05D007615 ORTHO05D009643 2.1e-61 239.6 191 70.2
Actinidia00935 Actinidia chinensis HOM05D007615 ORTHO05D009643 4.6e-61 238.4 199 62.8
Dinv20960 Davidia involucrata HOM05D000277 ORTHO05D000214 6.7e-60 234.6 172 68.0
Dinv20983 Davidia involucrata HOM05D000277 ORTHO05D000214 6.7e-60 234.6 172 68.0
COL.COLO4_24429 Corchorus olitorius HOM05D007615 ORTHO05D009643 3.3e-59 232.3 200 61.5
Thecc.09G179400 Theobroma cacao HOM05D007615 ORTHO05D009643 3.3e-59 232.3 200 60.0
Lalb_Chr17g0346631 Lupinus albus HOM05D007615 ORTHO05D009643 1.7e-58 229.9 200 60.5
vmacro10061 Vaccinium macrocarpon HOM05D007615 ORTHO05D009643 1.7e-58 229.9 201 60.7
Ciclev10032806m.g Citrus clementina HOM05D007615 ORTHO05D009643 2.2e-58 229.6 198 62.1
Glyma.14G061700 Glycine max HOM05D007615 ORTHO05D009643 2.2e-58 229.6 201 63.2
Phvul.008G225800 Phaseolus vulgaris HOM05D007615 ORTHO05D009643 3.7e-58 228.8 201 61.7
CsaV3_6G001660 Cucumis sativus L. HOM05D007615 ORTHO05D009643 4.8e-58 228.4 198 58.1
LjContig00357g0021515 Lotus japonicus HOM05D007615 ORTHO05D009643 6.3e-58 228.0 201 61.2
Rhsim09G0172300 Rhododendron simsii HOM05D007615 ORTHO05D009643 1.4e-57 226.9 199 60.3
CSS0034825 Camellia sinensis var. sinensis HOM05D007615 ORTHO05D009643 2.4e-57 226.1 170 66.5
MELO3C008283.2 Cucumis melo HOM05D007615 ORTHO05D009643 4.1e-57 225.3 198 58.1
Gohir.D08G029400 Gossypium hirsutum HOM05D007615 ORTHO05D009643 2.0e-56 223.0 200 57.0
Gorai.004G026800 Gossypium raimondii HOM05D007615 ORTHO05D009643 7.7e-56 221.1 200 56.5
Sed0010184 Sechium edule HOM05D007615 ORTHO05D009643 7.7e-56 221.1 197 56.9
Gohir.A08G018800 Gossypium hirsutum HOM05D007615 ORTHO05D009643 1.0e-55 220.7 200 56.5
ClCG11G006310 Citrullus lanatus HOM05D007615 ORTHO05D009643 1.3e-55 220.3 197 54.3
Ca_05936_v3 Cicer arietinum L. HOM05D007615 ORTHO05D009643 1.7e-55 219.9 201 57.7
PSO339G1281 Papaver somniferum HOM05D007615 ORTHO05D009643 5.0e-55 218.4 201 59.7
Potri.008G065101 Populus trichocarpa HOM05D007615 ORTHO05D009643 5.0e-55 218.4 140 82.9
Cfa001360 Carpinus fangiana HOM05D007615 ORTHO05D009643 6.5e-55 218.0 162 71.0
Cc02_g06860 Coffea canephora HOM05D007615 ORTHO05D009643 1.1e-54 217.2 198 60.6
Medtr5g081970 Medicago truncatula HOM05D007615 ORTHO05D009643 2.5e-54 216.1 201 55.7
PGR142G0690 Punica granatum HOM05D007615 ORTHO05D009643 9.4e-54 214.2 197 57.9
PSO384G4204 Papaver somniferum HOM05D007615 ORTHO05D009643 1.2e-53 213.8 201 59.2
Nn2g11402 Nelumbo nucifera HOM05D007615 ORTHO05D009643 1.6e-53 213.4 200 56.0
Psat2g035440 Pisum sativum HOM05D007615 ORTHO05D009643 2.1e-53 213.0 200 57.5
ECA238G0429 Erigeron canadensis HOM05D007615 ORTHO05D009643 4.7e-53 211.8 195 56.4
Cpa.g.sc19.199 Carica papaya HOM05D007615 ORTHO05D009643 6.1e-53 211.5 195 56.9
Prupe.2G246900 Prunus persica HOM05D007615 ORTHO05D009643 1.8e-52 209.9 200 59.0
Aqoxy4G02652 Aquilegia oxysepala HOM05D007615 ORTHO05D009643 2.3e-52 209.5 200 58.5
RcHm_v2.0_Chr1g0369501 Rosa chinensis HOM05D007615 ORTHO05D009643 8.8e-52 207.6 199 57.8
Sc11g0007250 Simmondsia chinensis HOM05D007615 ORTHO05D009643 2.6e-51 206.1 197 52.3
Duzib170G1068 Durio zibethinus HOM05D007615 ORTHO05D009643 3.3e-51 205.7 186 58.1
VMungo0647G1713 Vigna mungo HOM05D007615 ORTHO05D009643 3.3e-51 205.7 186 59.1
HanXRQChr07g0202461 Helianthus annuus HOM05D007615 ORTHO05D009643 9.7e-51 204.1 195 55.4
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.1e-49 199.1 200 51.0
MD07G1214900 Malus domestica HOM05D007615 ORTHO05D009643 3.1e-49 199.1 202 54.0
FAN01G2468 Fragaria x ananassa HOM05D007615 ORTHO05D009643 1.2e-48 197.2 191 56.5
TPR.G19858 Trifolium pratense HOM05D007615 ORTHO05D009643 1.2e-48 197.2 208 52.4
FAN10G2819 Fragaria x ananassa HOM05D007615 ORTHO05D009643 2.0e-48 196.4 197 55.8
FAN03G2533 Fragaria x ananassa HOM05D007615 ORTHO05D009643 5.9e-48 194.9 197 56.3
Sopen04g004760 Solanum pennellii HOM05D007615 ORTHO05D009643 7.7e-48 194.5 193 53.9
PGSC0003DMG400016017 Solanum tuberosum HOM05D007615 ORTHO05D009643 7.7e-48 194.5 192 53.6
FAN06G4073 Fragaria x ananassa HOM05D007615 ORTHO05D009643 3.8e-47 192.2 184 56.5
Dinv34419 Davidia involucrata HOM05D007615 ORTHO05D009643 2.5e-46 189.5 200 53.5
DCAR_012632 Daucus carota HOM05D007615 ORTHO05D009643 3.2e-46 189.1 150 62.0
EL10Ac2g04791 Beta vulgaris HOM05D007615 ORTHO05D009643 9.4e-46 187.6 141 63.1
Lsat_1_v5_gn_2_121681 Lactuca sativa HOM05D000277 ORTHO05D000214 4.7e-45 185.3 167 55.7
Psat3g208000 Pisum sativum HOM05D007615 ORTHO05D009643 1.0e-44 184.1 151 64.9
Nitab4.5_0001654g0050 Nicotiana tabacum HOM05D007615 ORTHO05D009643 1.2e-43 180.6 196 53.1
Nitab4.5_0000737g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 4.4e-43 178.7 140 65.0
Oeu063511.1 Olea europaea HOM05D007615 ORTHO05D009643 1.3e-42 177.2 144 59.7
Ah.16g103150 Amaranthus hybridus HOM05D007615 ORTHO05D009643 2.2e-42 176.4 170 51.2
Hund13833 Selenicereus undatus HOM05D007615 ORTHO05D009643 1.2e-40 170.6 139 60.4
RcHm_v2.0_Chr3g0468601 Rosa chinensis HOM05D007615 ORTHO05D009643 1.9e-38 163.3 199 49.2
Sp5g06670 Schrenkiella parvula HOM05D007615 ORTHO05D009643 2.7e-37 159.5 203 44.3
Aa31LG10G10810 Aethionema arabicum HOM05D007615 ORTHO05D009643 2.3e-36 156.4 199 48.2
THA.LOC104810077 Tarenaya hassleriana HOM05D007615 ORTHO05D009643 1.5e-35 153.7 192 46.4
Peaxi162Scf00079g00249 Petunia axillaris HOM05D007615 ORTHO05D009643 3.4e-35 152.5 117 65.0
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 4.4e-35 152.1 187 46.5
Thhalv10010736m.g Eutrema salsugineum HOM05D007615 ORTHO05D009643 5.7e-35 151.8 200 45.5
CDE10G1314 Ceratophyllum demersum HOM05D007615 ORTHO05D009643 2.2e-34 149.8 160 48.8
AT3G55820 Arabidopsis thaliana HOM05D007615 ORTHO05D009643 2.8e-34 149.4 197 44.2
CARHR165930 Cardamine hirsuta HOM05D007615 ORTHO05D009643 4.8e-34 148.7 205 42.4
AL5G37110 Arabidopsis lyrata HOM05D007615 ORTHO05D009643 6.3e-34 148.3 206 43.2
Migut.F01421 Erythranthe guttata HOM05D007615 ORTHO05D009643 4.1e-33 145.6 193 43.5
A09p48810 Brassica napus HOM05D007615 ORTHO05D009643 7.0e-33 144.8 203 46.3
BraA09t40334Z Brassica rapa HOM05D007615 ORTHO05D009643 7.0e-33 144.8 203 46.3
SalBow6G0125 Salvia bowleyana HOM05D007615 ORTHO05D009643 2.0e-32 143.3 171 46.8
HPP92_006631 Vanilla planifolia HOM05D007615 ORTHO05D009643 2.7e-32 142.9 134 53.7
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 3.5e-32 142.5 175 44.6
C08p31140 Brassica napus HOM05D007615 ORTHO05D009643 3.5e-32 142.5 205 45.4
BolC8t50735H Brassica oleracea HOM05D007615 ORTHO05D009643 5.9e-32 141.7 205 45.4
Carub.0005s2260 Capsella rubella HOM05D007615 ORTHO05D009643 6.5e-31 138.3 207 43.0
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 8.5e-31 137.9 180 44.4
unitig_62.g23933 Utricularia gibba HOM05D007615 ORTHO05D009643 8.5e-31 137.9 183 41.0
BcaB01g00059 Brassica carinata HOM05D007615 ORTHO05D009643 3.0e-28 129.4 202 41.6
SEGI_38309 Sequoiadendron giganteum HOM05D007615 ORTHO05D009643 1.5e-27 127.1 205 40.5
Nitab4.5_0002613g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 4.3e-22 109.0 78 67.9
Oeu046579.1 Olea europaea HOM05D007615 ORTHO05D009643 9.5e-22 107.8 121 47.9
Mapoly0011s0100 Marchantia polymorpha HOM05D007615 ORTHO05D009643 2.6e-19 99.8 203 35.5
Manes.10G016915 Manihot esculenta HOM05D007615 ORTHO05D009643 3.4e-19 99.4 120 46.7
Pp3c3_19950 Physcomitrium patens HOM05D007615 ORTHO05D009643 1.6e-16 90.5 137 35.8
AagrBONN_evm.TU.Sc2ySwM_368.2678 Anthoceros agrestis HOM05D007615 ORTHO05D009643 4.6e-16 89.0 192 30.7
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 2.1e-13 80.1 148 36.5
SMO139G0141 Selaginella moellendorffii HOM05D007615 ORTHO05D009643 2.8e-13 79.7 148 36.5
Lalb_Chr04g0250741 Lupinus albus HOM05D007615 ORTHO05D009643 2.3e-07 60.1 45 62.2


User provided reference genes

Program Settings