Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.7e-274 947.6 480 100.0
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 1.8e-247 859.0 480 89.8
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 4.5e-243 844.3 480 88.1
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.3e-239 832.8 480 86.9
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 7.4e-214 747.3 478 77.0
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 7.2e-209 730.7 479 76.0
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.6e-200 703.0 466 75.5
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 5.7e-198 694.5 465 74.4
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.8e-197 692.2 486 71.6
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 4.8e-197 691.4 465 73.8
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.4e-196 689.9 465 74.2
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.8e-196 689.5 467 73.4
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 3.1e-196 688.7 490 71.0
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 2.9e-194 682.2 484 70.7
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.0e-194 681.4 467 71.5
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.0e-194 681.4 468 73.3
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.5e-194 681.0 466 73.6
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 6.5e-194 681.0 470 71.7
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.9e-193 679.5 466 73.4
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-192 676.8 465 73.5
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 1.2e-192 676.8 482 70.1
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.6e-192 676.4 467 73.7
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-191 671.8 467 73.2
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 4.0e-191 671.8 490 69.2
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.5e-190 669.8 467 73.2
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.8e-189 665.6 465 70.3
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.8e-189 664.8 467 70.9
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.3e-189 664.1 474 70.5
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.1e-188 661.8 483 68.3
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 5.4e-188 661.4 480 69.6
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 5.4e-188 661.4 467 71.1
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.7e-187 657.5 480 68.1
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.7e-187 657.5 467 70.7
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.7e-186 656.4 480 67.5
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.5e-185 653.3 483 68.9
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.0e-183 647.1 474 68.1
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 1.4e-183 646.7 470 70.2
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.2e-182 643.7 470 68.1
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 4.9e-181 638.3 480 67.5
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.1e-180 637.1 479 66.6
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.8e-180 636.3 483 67.7
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.2e-180 635.6 470 67.0
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 5.4e-180 634.8 469 67.2
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 7.0e-180 634.4 465 68.8
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.0e-178 630.6 481 65.3
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 8.6e-178 627.5 493 65.5
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.1e-177 627.1 468 67.9
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.9e-177 626.3 454 69.4
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 3.3e-177 625.5 474 65.6
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 8.9e-175 617.5 480 65.6
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 5.8e-174 614.8 461 67.0
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.7e-173 613.2 481 64.7
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 5.4e-172 608.2 460 67.2
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 2.0e-171 606.3 475 64.2
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 3.9e-170 602.1 467 66.2
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.1e-169 600.5 481 65.3
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 2.8e-168 595.9 483 62.7
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 3.6e-168 595.5 482 64.9
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 2.9e-165 585.9 488 63.1
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.6e-163 580.1 473 62.6
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.9e-161 573.2 481 59.0
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 4.3e-161 572.0 467 60.8
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.2e-160 570.5 472 62.9
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.8e-159 566.6 465 61.9
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 8.9e-159 564.3 472 62.9
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.2e-158 563.9 466 59.4
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.0e-158 563.1 468 62.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.6e-158 562.8 484 59.9
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.7e-157 558.9 484 59.9
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.4e-156 556.2 469 60.6
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.9e-154 548.9 473 60.3
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 1.1e-153 547.4 470 60.0
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 1.1e-153 547.4 472 59.5
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.5e-153 546.2 468 60.0
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.5e-153 546.2 458 60.9
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.6e-152 543.5 473 60.3
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.8e-152 542.7 459 60.6
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.4e-151 540.4 483 57.8
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.2e-150 537.3 469 58.0
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.4e-150 535.4 469 59.9
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.3e-149 533.9 464 58.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.3e-149 533.9 473 60.7
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 4.9e-149 531.9 470 57.9
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.9e-148 530.0 476 59.0
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.2e-147 527.3 472 57.0
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.8e-147 524.6 470 57.9
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.4e-143 513.1 473 56.2
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 2.2e-141 506.5 466 56.0
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 9.3e-140 501.1 467 54.8
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.2e-139 500.7 466 54.5
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 2.7e-139 499.6 466 56.0
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 4.6e-139 498.8 472 55.1
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 6.0e-139 498.4 469 55.0
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.0e-138 497.7 472 54.9
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.7e-138 496.9 468 54.1
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.7e-138 496.9 468 57.1
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 6.6e-138 495.0 466 55.6
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.6e-138 495.0 407 60.2
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 1.9e-137 493.4 466 55.4
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.3e-136 490.7 476 54.4
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-136 490.3 466 55.2
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 3.6e-136 489.2 466 54.9
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 4.8e-136 488.8 466 54.9
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 6.2e-136 488.4 467 54.4
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 8.1e-136 488.0 484 52.3
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 8.1e-136 488.0 466 56.0
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.2e-134 484.2 396 60.1
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 4.9e-133 478.8 475 53.7
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.1e-132 477.6 475 52.2
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.9e-132 476.9 458 55.7
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 7.1e-132 474.9 468 53.0
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 9.3e-132 474.6 378 64.8
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 9.3e-132 474.6 378 64.8
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.3e-130 470.7 465 53.3
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.8e-130 470.3 468 52.4
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 2.3e-130 469.9 470 51.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 3.9e-130 469.2 468 52.4
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 6.7e-130 468.4 477 50.7
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 8.7e-130 468.0 468 52.4
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-129 467.6 468 52.6
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-129 467.6 468 52.6
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.9e-129 466.8 470 53.2
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.9e-129 466.8 466 54.1
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 3.3e-129 466.1 446 54.3
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.3e-129 466.1 467 51.6
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.4e-129 464.9 466 53.6
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 7.4e-129 464.9 455 54.3
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.3e-128 464.2 466 53.9
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.8e-128 462.2 473 51.6
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 8.1e-128 461.5 467 52.7
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.4e-127 460.7 455 52.1
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 6.9e-127 458.4 467 52.5
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 6.9e-127 458.4 467 52.5
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.5e-126 457.2 467 53.1
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 1.0e-125 454.5 467 52.7
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-125 454.1 467 52.2
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-125 454.1 467 52.2
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 8.4e-125 451.4 467 52.5
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-124 451.1 467 51.6
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.5e-124 449.9 467 51.4
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 8.7e-122 441.4 485 50.1
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 2.5e-121 439.9 427 53.4
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 9.6e-121 438.0 467 51.0
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 4.1e-119 432.6 476 50.2
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 7.9e-115 418.3 433 52.0
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 7.4e-113 411.8 436 48.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.9e-109 399.8 450 47.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.8e-96 356.7 441 44.2
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.1e-95 353.2 447 42.7
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.1e-95 351.7 492 41.5
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.6e-94 350.1 441 44.0
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-92 344.4 467 45.4
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.2e-90 335.9 442 40.3
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 6.5e-85 318.9 353 50.7
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.0e-82 309.7 337 53.1
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 2.1e-75 287.3 205 72.2
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.7e-70 270.4 347 40.6
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.5e-65 254.6 209 58.9
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 4.6e-62 243.0 203 57.6
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 5.9e-62 242.7 203 57.6
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.0e-55 219.2 163 62.0
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 4.0e-50 203.4 220 51.8
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.9e-47 194.5 164 61.0
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.5e-44 184.1 325 38.2
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 6.8e-34 149.4 137 54.0
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-28 131.7 290 36.2
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 2.5e-20 104.4 92 56.5
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.2e-17 95.5 88 54.5
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.1e-15 89.0 90 52.2
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.9e-13 80.5 95 43.2
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 1.5e-12 78.6 171 35.1
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.7e-08 65.1 67 47.8
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 1.9e-07 61.6 91 37.4
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 9.3e-07 59.3 38 65.8


User provided reference genes

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