Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.3e-101 371.7 185 100.0
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 5.2e-91 337.8 185 90.3
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 1.7e-89 332.8 185 90.3
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 4.6e-87 324.7 185 83.8
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 3.1e-75 285.4 186 78.5
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 4.0e-75 285.0 186 76.3
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.9e-73 278.9 186 76.3
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.9e-73 278.9 186 76.3
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.9e-73 278.9 186 76.3
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 2.9e-73 278.9 186 76.3
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 5.4e-72 274.6 185 73.5
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.2e-71 273.5 186 74.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.6e-71 273.1 186 76.9
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.0e-70 270.4 182 74.7
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 2.3e-70 269.2 185 78.4
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 3.0e-70 268.9 182 74.2
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 8.7e-70 267.3 186 72.6
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 2.8e-68 262.3 182 73.6
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 3.6e-68 261.9 186 71.0
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 3.6e-68 261.9 187 71.7
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 4.8e-68 261.5 186 71.5
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 6.2e-68 261.2 182 73.1
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 6.2e-68 261.2 187 71.1
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 8.1e-68 260.8 186 73.1
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.1e-67 260.4 186 70.4
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.1e-67 260.4 186 70.4
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.1e-67 260.4 183 73.8
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.8e-67 259.6 179 73.7
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 2.4e-67 259.2 182 72.0
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 3.1e-67 258.8 186 71.0
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 6.9e-67 257.7 186 69.9
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 6.9e-67 257.7 185 71.4
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.5e-66 256.5 187 69.5
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.0e-66 256.1 186 68.3
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 2.0e-66 256.1 186 68.8
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 2.0e-66 256.1 187 72.2
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.6e-66 255.8 192 69.3
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.4e-66 255.4 183 72.7
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 3.4e-66 255.4 186 68.8
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 4.5e-66 255.0 186 68.3
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 5.8e-66 254.6 186 69.4
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 7.6e-66 254.2 181 71.8
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 7.6e-66 254.2 170 73.5
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 9.9e-66 253.8 186 69.4
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 1.7e-65 253.1 187 70.6
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 4.9e-65 251.5 187 70.1
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 8.4e-65 250.8 187 69.5
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 8.4e-65 250.8 185 68.1
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 8.4e-65 250.8 186 67.7
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 8.4e-65 250.8 169 73.4
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.1e-64 250.4 184 70.1
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.4e-64 250.0 186 70.4
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 2.4e-64 249.2 185 68.1
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 2.4e-64 249.2 183 67.8
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 3.2e-64 248.8 186 68.8
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.2e-64 248.4 186 68.3
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 4.2e-64 248.4 186 67.2
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 4.2e-64 248.4 187 67.9
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 5.5e-64 248.1 186 65.6
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 7.1e-64 247.7 186 69.9
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 7.1e-64 247.7 186 67.7
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.1e-64 247.7 186 67.7
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 9.3e-64 247.3 186 67.7
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 9.3e-64 247.3 186 66.7
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.2e-63 246.9 187 70.1
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 1.2e-63 246.9 187 69.0
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 2.1e-63 246.1 186 66.1
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 3.5e-63 245.4 182 68.1
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 6.0e-63 244.6 187 66.3
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 7.9e-63 244.2 187 67.9
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.0e-62 243.8 186 67.2
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.3e-62 243.4 186 67.7
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 3.0e-62 242.3 186 67.7
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 3.9e-62 241.9 207 60.9
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 6.7e-62 241.1 186 70.4
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 8.7e-62 240.7 167 73.7
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.9e-61 239.6 183 66.1
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 3.3e-61 238.8 187 66.3
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 3.3e-61 238.8 183 66.1
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 5.6e-61 238.0 183 65.6
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 9.6e-61 237.3 187 64.7
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 1.6e-60 236.5 183 65.0
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 2.1e-60 236.1 178 68.0
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 3.7e-60 235.3 186 68.8
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 6.2e-60 234.6 182 65.4
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 8.1e-60 234.2 183 64.5
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.1e-59 233.8 187 64.7
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 1.1e-59 233.8 183 63.4
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.2e-58 230.3 182 62.6
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.0e-58 229.6 183 63.9
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 3.4e-58 228.8 187 66.8
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.3e-57 226.9 180 64.4
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.2e-57 226.1 186 65.1
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.9e-56 223.0 186 65.1
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.9e-56 223.0 184 64.1
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 2.5e-56 222.6 184 64.1
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 4.2e-56 221.9 189 64.6
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 9.3e-56 220.7 189 65.1
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 9.3e-56 220.7 184 62.0
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.6e-55 219.9 189 63.0
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 4.6e-55 218.4 186 62.9
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 4.6e-55 218.4 189 63.5
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 4.6e-55 218.4 184 60.9
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 7.9e-55 217.6 189 63.5
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 7.9e-55 217.6 189 63.5
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 3.9e-54 215.3 184 58.7
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 3.9e-54 215.3 185 63.8
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.9e-53 213.0 184 60.3
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.5e-50 203.4 149 69.8
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 7.6e-50 201.1 184 56.0
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.2e-48 195.7 188 60.1
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 5.1e-46 188.3 150 67.3
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.9e-45 186.4 175 60.0
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.3e-45 185.7 147 63.3
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 7.4e-45 184.5 148 63.5
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.3e-44 183.7 183 51.9
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.3e-44 183.7 201 55.2
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.6e-44 183.3 160 63.1
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 3.7e-44 182.2 182 51.1
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.4e-43 180.3 199 52.8
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.4e-43 180.3 183 50.8
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.4e-43 179.5 166 60.2
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 6.5e-41 171.4 186 54.3
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.2e-40 168.7 183 51.4
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 2.3e-38 162.9 103 75.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.6e-37 159.5 184 48.9
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.8e-36 156.0 112 67.0
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.5e-34 150.2 185 41.1
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.8e-33 145.6 147 54.4
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.9e-32 143.3 156 51.3
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.0e-25 120.9 118 54.2
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.1e-23 113.2 104 53.8
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.6e-21 106.3 98 60.2
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.7e-20 103.6 79 68.4
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 1.1e-19 100.9 71 66.2
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 4.5e-18 95.5 189 31.7
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 5.0e-17 92.0 167 33.5
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 8.5e-17 91.3 72 55.6
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.5e-16 90.5 81 65.4
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 4.2e-16 89.0 62 66.1


User provided reference genes

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