Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 0.0e+00 1685.2 807 100.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 0.0e+00 1549.6 834 89.3
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-301 1039.6 692 71.7
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.5e-296 1022.7 697 70.2
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.2e-293 1013.1 687 69.0
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 3.3e-291 1005.0 689 68.9
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 9.7e-291 1003.4 690 69.3
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.4e-289 998.8 685 68.5
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 3.1e-289 998.4 689 69.8
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.5e-288 996.1 693 68.1
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 5.0e-287 991.1 674 68.4
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.5e-286 988.8 685 69.8
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.9e-285 983.8 685 68.9
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.1e-283 979.9 693 66.4
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.7e-282 974.9 670 70.3
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 3.1e-281 971.8 670 68.4
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.4e-280 968.4 693 67.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.0e-279 966.8 703 67.4
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 8.5e-279 963.8 725 63.7
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 7.2e-278 960.7 691 65.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.2e-277 959.9 689 67.8
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.6e-277 958.4 692 67.5
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.9e-277 957.2 689 67.6
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.4e-276 956.4 685 66.9
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 4.4e-275 951.4 694 65.0
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.7e-275 951.0 691 65.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.1e-273 946.8 715 64.5
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.4e-273 946.4 723 62.2
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.3e-273 944.5 687 66.2
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 9.1e-273 943.7 815 58.3
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.5e-272 941.4 717 63.5
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.9e-272 941.0 710 64.1
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.7e-272 940.6 684 64.9
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.7e-271 939.5 686 64.6
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.9e-271 938.7 688 64.8
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.3e-266 923.3 685 64.7
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.3e-266 923.3 618 70.1
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.3e-266 923.3 686 64.6
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.7e-266 922.9 668 66.3
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.2e-266 922.5 716 62.8
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.8e-266 922.2 699 63.4
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.8e-266 922.2 682 65.7
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 3.7e-266 921.8 699 63.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.1e-265 920.2 689 65.6
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.8e-265 919.5 719 62.3
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.1e-265 918.7 669 66.1
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 7.7e-264 914.1 672 65.5
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.7e-263 912.9 690 64.9
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 6.5e-263 911.0 689 64.7
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 7.2e-262 907.5 674 63.6
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 9.4e-262 907.1 849 55.8
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 6.1e-261 904.4 694 62.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 4.0e-260 901.7 673 64.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.5e-259 899.8 689 64.7
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.8e-258 894.8 689 61.7
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.8e-257 892.9 671 64.7
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 2.4e-257 892.5 672 64.4
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.4e-257 892.5 689 61.7
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 3.1e-257 892.1 685 64.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.6e-256 889.8 685 63.4
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.9e-255 885.6 628 68.2
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 6.5e-255 884.4 684 62.6
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 8.6e-255 884.0 675 63.3
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.9e-254 882.9 688 62.8
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.5e-254 882.5 699 60.4
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.2e-253 880.2 704 59.9
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 2.8e-253 879.0 699 60.2
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 6.1e-253 877.9 688 61.2
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.3e-252 875.9 613 68.2
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.3e-250 870.2 780 55.6
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.4e-249 865.9 691 60.2
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-247 859.8 690 59.6
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 8.6e-247 857.4 686 59.8
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.6e-246 854.7 685 60.0
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 7.3e-246 854.4 683 59.9
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.4e-244 850.1 609 67.0
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.8e-244 847.8 691 60.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 9.8e-243 844.0 701 61.1
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.3e-242 843.6 692 58.4
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 3.7e-242 842.0 678 61.1
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.5e-240 835.5 681 58.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.9e-238 829.7 678 59.9
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 7.3e-238 827.8 592 67.4
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.6e-237 825.5 687 60.0
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 3.1e-236 822.4 702 56.8
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 6.4e-234 814.7 693 56.4
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.4e-233 813.5 679 56.8
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.3e-231 806.2 684 58.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.0e-231 805.1 673 56.0
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.0e-231 805.1 670 60.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.1e-230 803.9 686 55.8
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.3e-230 802.0 727 55.8
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 6.2e-229 798.1 693 55.7
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 8.1e-229 797.7 674 56.1
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 4.0e-228 795.4 694 54.9
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.2e-227 793.9 694 55.6
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 3.4e-227 792.3 665 56.4
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 7.5e-227 791.2 694 54.6
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 7.5e-227 791.2 694 54.6
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.5e-227 791.2 682 57.3
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 7.5e-227 791.2 674 55.2
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.7e-226 790.0 686 55.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 5.4e-225 785.0 693 54.4
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.7e-224 782.7 669 56.2
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-223 779.6 732 54.0
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.3e-223 779.6 676 56.1
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 8.6e-223 777.7 676 55.0
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.5e-222 774.2 694 53.5
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 4.7e-221 771.9 672 58.8
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.2e-220 768.5 677 54.8
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.2e-219 767.3 698 52.6
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 4.4e-219 765.4 535 69.7
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 5.8e-219 765.0 663 58.4
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.4e-218 761.1 678 54.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 7.1e-217 758.1 692 56.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 6.0e-216 755.0 677 53.3
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.7e-215 753.4 690 53.3
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-214 750.0 675 57.5
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.1e-212 744.2 681 53.6
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.2e-211 740.7 693 54.7
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.8e-210 735.7 671 54.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.8e-210 735.7 748 48.4
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.1e-208 729.9 687 55.3
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 3.5e-208 729.2 654 55.5
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 5.1e-199 698.7 673 51.1
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.6e-197 693.7 706 51.8
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 4.5e-195 685.6 686 53.5
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.1e-185 654.4 686 48.1
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.3e-183 647.5 687 49.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 6.9e-180 635.2 535 57.8
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 5.1e-175 619.0 677 48.4
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.5e-153 547.7 552 50.4
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-140 505.0 356 64.3
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.4e-134 483.0 398 59.5
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.6e-131 474.6 426 51.9
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.2e-120 438.3 401 55.9
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.9e-116 424.5 289 67.5
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.6e-112 411.4 412 50.2
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 2.4e-108 397.5 231 80.5
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 2.6e-102 377.5 314 54.5
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 5.8e-102 376.3 457 43.5
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.4e-95 354.4 593 36.6
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.4e-87 328.6 582 36.4
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.8e-87 328.2 332 50.3
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 3.1e-87 327.4 312 48.7
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.2e-83 315.5 547 34.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.1e-63 247.7 248 54.4
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 4.1e-63 247.3 156 72.4
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 3.4e-62 244.2 151 71.5
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 8.2e-56 223.0 139 74.1
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.4e-55 221.5 211 53.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 5.7e-49 200.3 215 47.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 4.8e-48 197.2 233 45.9
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.4e-44 185.7 180 52.8
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.4e-44 185.7 119 67.2
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.9e-44 185.3 129 66.7
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.8e-42 178.7 386 31.6
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-39 168.3 99 75.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-39 168.3 99 75.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-39 168.3 99 75.8
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.4e-33 147.9 281 36.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.4e-31 142.5 253 35.2
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 5.3e-31 140.6 135 50.4
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.2e-28 131.3 253 30.8
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.2e-27 129.4 154 43.5
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 3.4e-25 121.3 238 34.0
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 5.7e-25 120.6 147 43.5
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.5e-20 105.9 207 36.2
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 4.4e-17 94.4 59 71.2
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.3e-16 90.1 73 56.2
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.3e-12 77.8 48 68.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.3e-12 77.8 48 68.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 4.3e-12 77.8 52 69.2
Migut.L00955 Erythranthe guttata HOM05D001383 ORTHO05D000309 6.0e-06 57.4 79 36.7
Hma1.2p1_0071F.1_g038200 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.0e-06 57.4 95 33.7
Hma1.2p1_0211F.1_g089820 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.0e-06 57.4 95 33.7


User provided reference genes

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