Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 0.0e+00 1538.5 756 100.0
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 0.0e+00 1411.4 815 86.3
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 0.0e+00 1347.0 756 86.5
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 0.0e+00 1300.0 757 84.1
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 0.0e+00 1138.6 748 73.9
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 0.0e+00 1095.9 739 71.6
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.3e-308 1062.8 755 68.6
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 1.1e-307 1059.7 702 72.2
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 9.0e-307 1056.6 702 71.8
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 1.0e-302 1043.1 702 70.7
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.8e-302 1042.3 741 67.9
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 3.1e-299 1031.6 740 67.3
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.4e-296 1022.7 744 68.0
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.5e-296 1021.9 743 66.4
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 4.2e-296 1021.1 743 66.4
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 2.1e-295 1018.8 699 69.8
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.4e-294 1016.1 745 65.5
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 4.3e-293 1011.1 754 65.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 5.7e-293 1010.7 738 66.1
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 2.6e-290 1001.9 749 66.0
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 1.2e-287 993.0 702 66.8
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 9.7e-285 983.4 700 67.4
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 2.4e-283 978.8 708 65.5
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 5.3e-283 977.6 702 67.8
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 2.0e-282 975.7 702 66.1
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 3.5e-282 974.9 746 65.1
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 7.7e-282 973.8 707 67.6
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 6.5e-281 970.7 705 65.0
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.2e-280 968.4 738 65.4
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 3.2e-280 968.4 737 63.6
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 2.0e-277 959.1 714 65.1
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 9.1e-275 950.3 705 64.8
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.0e-274 949.1 705 65.5
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.6e-274 948.7 714 64.6
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 3.5e-274 948.3 707 64.4
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 7.7e-274 947.2 707 65.6
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.5e-272 943.0 702 63.2
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 5.5e-272 941.0 704 65.2
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 1.2e-271 939.9 702 64.2
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 3.0e-270 935.3 701 64.5
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.2e-269 933.3 744 61.6
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.7e-268 929.5 746 62.5
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 2.2e-268 929.1 703 63.3
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.1e-267 926.8 704 63.1
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 4.1e-267 924.9 743 61.1
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 3.5e-266 921.8 742 60.6
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.2e-265 919.1 689 64.3
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.1e-264 916.8 747 60.0
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.9e-264 916.0 697 62.3
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 9.4e-264 913.7 705 63.3
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.2e-263 913.3 619 70.1
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 2.1e-263 912.5 748 59.9
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.7e-263 912.1 710 63.5
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 8.8e-262 907.1 741 60.7
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.6e-261 905.6 741 62.2
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.7e-260 902.9 710 63.1
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 2.8e-260 902.1 728 59.8
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.1e-259 898.7 697 62.0
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 5.0e-257 891.3 740 60.3
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.1e-256 890.2 742 59.8
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 1.5e-256 889.8 711 61.7
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 2.5e-256 889.0 712 61.5
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.2e-255 886.7 712 62.4
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 2.1e-255 885.9 698 62.2
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 8.0e-255 884.0 702 61.5
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 5.2e-254 881.3 620 68.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 1.4e-251 873.2 704 60.4
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 5.4e-251 871.3 751 56.5
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 7.0e-251 870.9 759 57.8
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 8.6e-249 864.0 713 59.6
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.6e-247 859.8 703 59.5
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 4.0e-246 855.1 745 57.0
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.6e-245 852.4 752 57.2
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.4e-243 846.7 751 56.7
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.9e-243 846.3 757 56.8
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.6e-242 843.2 714 59.2
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 1.1e-238 830.5 740 56.2
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 6.4e-236 821.2 698 57.7
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.3e-233 813.5 703 57.0
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.4e-230 803.5 703 55.6
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 1.2e-229 800.4 680 56.6
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.9e-227 793.1 714 56.3
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 9.2e-227 790.8 750 54.0
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 5.1e-225 785.0 647 62.0
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.8e-223 779.2 713 54.1
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.6e-223 778.9 548 66.6
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.5e-221 773.5 638 58.9
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 5.8e-221 771.5 662 57.6
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 3.8e-220 768.8 723 53.0
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 6.2e-215 751.5 698 54.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 9.9e-213 744.2 691 56.0
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 5.4e-211 738.4 694 54.0
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.9e-192 676.8 746 48.8
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.7e-192 675.2 712 47.9
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.7e-191 672.5 708 50.8
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.9e-185 652.5 586 55.8
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.9e-184 650.2 651 53.6
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 2.0e-173 613.6 480 61.9
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.4e-150 537.7 366 70.2
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 7.7e-149 531.9 431 60.6
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 6.5e-148 528.9 495 54.1
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 4.1e-134 483.0 682 38.9
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.9e-132 476.9 709 37.2
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 5.0e-124 449.5 779 36.1
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 3.2e-118 430.3 755 33.9
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 2.1e-117 427.6 614 38.3
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 7.8e-117 425.6 365 56.4
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 8.6e-116 422.2 665 36.5
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.7e-111 406.8 768 33.9
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.4e-110 402.9 762 33.5
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.5e-104 384.8 345 55.9
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 3.1e-89 334.0 327 53.5
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 9.0e-81 305.8 285 56.5
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 3.2e-70 270.8 189 65.1
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 2.5e-67 261.2 572 31.3
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 3.8e-63 247.3 176 67.0
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 3.2e-62 244.2 191 64.9
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 3.0e-60 237.7 167 65.3
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.4e-57 228.0 176 65.3
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.3e-55 222.2 339 36.9
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 8.8e-44 183.0 502 29.1
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 9.8e-35 152.9 124 62.1
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 4.5e-32 144.1 127 48.8
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.1e-25 121.3 75 72.0
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.3e-23 115.2 88 56.8
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.0e-16 92.0 83 53.0
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.0e-15 88.2 83 49.4
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.9e-14 85.5 400 23.8
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 3.6e-13 81.3 118 38.1
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.3e-10 72.8 104 45.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 6.0e-08 63.9 60 58.3
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 5.0e-07 60.8 129 34.1
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.5e-06 59.3 48 60.4


User provided reference genes

Program Settings