Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 4.9e-252 874.0 444 100.0
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 4.1e-243 844.3 450 95.6
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 4.6e-210 734.6 468 79.7
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 5.6e-208 727.6 451 80.5
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 9.6e-208 726.9 448 81.7
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.8e-207 725.3 450 80.7
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 7.6e-205 717.2 441 80.7
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 1.3e-204 716.5 444 80.9
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 1.3e-204 716.5 432 83.1
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 2.1e-202 709.1 446 79.4
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 3.5e-202 708.4 439 79.0
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 4.6e-202 708.0 443 79.5
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 4.6e-202 708.0 437 79.2
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 7.9e-202 707.2 438 80.1
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 1.0e-201 706.8 437 78.9
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 2.3e-201 705.7 444 80.0
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 3.9e-201 704.9 443 77.9
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 1.1e-200 703.4 439 78.8
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 1.5e-200 703.0 435 78.6
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 5.6e-200 701.0 433 79.2
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 1.3e-199 699.9 441 77.6
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 4.8e-199 698.0 441 79.1
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 4.8e-199 698.0 413 83.3
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 8.2e-199 697.2 444 76.8
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 1.4e-198 696.4 433 79.0
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 2.6e-197 692.2 441 75.3
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 1.7e-196 689.5 442 76.2
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 2.2e-196 689.1 441 77.1
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 3.8e-196 688.3 429 78.8
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 1.2e-194 683.3 407 81.3
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.6e-194 682.9 432 77.8
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.1e-194 682.6 421 79.1
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 4.6e-194 681.4 451 75.4
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 5.7e-192 674.5 436 76.8
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 4.1e-190 668.3 441 73.5
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 6.9e-190 667.5 437 76.4
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 1.2e-189 666.8 448 73.7
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 2.0e-189 666.0 422 74.9
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 2.0e-189 666.0 442 72.6
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 3.4e-189 665.2 440 75.9
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 5.9e-189 664.5 441 73.0
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 2.2e-188 662.5 388 82.7
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 2.1e-186 656.0 438 74.7
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 7.9e-186 654.1 386 80.1
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 2.3e-185 652.5 414 75.8
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 2.3e-185 652.5 414 75.8
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.7e-183 646.4 418 74.9
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 2.8e-183 645.6 430 74.9
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 6.9e-182 641.0 447 71.1
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 1.5e-181 639.8 457 71.1
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 3.4e-181 638.6 398 77.6
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 2.2e-180 636.0 444 70.7
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.7e-175 619.8 644 53.7
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.2e-175 619.4 451 71.6
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 1.8e-174 616.3 417 71.5
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.5e-173 613.2 388 73.7
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 5.9e-173 611.3 396 75.3
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.1e-171 607.1 537 58.8
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 3.2e-171 605.5 434 67.7
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 8.8e-169 597.4 365 80.8
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.9e-163 579.7 454 67.6
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 4.7e-162 575.1 438 68.7
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 8.0e-162 574.3 440 67.5
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.8e-161 573.2 438 66.4
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 7.5e-160 567.8 428 67.8
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 9.7e-160 567.4 445 66.1
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.3e-159 567.0 347 79.8
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 1.0e-156 557.4 352 77.8
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 3.8e-156 555.4 338 79.3
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 3.8e-156 555.4 450 64.7
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 2.1e-154 549.7 366 71.0
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 5.2e-153 545.0 438 65.5
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.5e-152 543.5 560 53.2
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 1.8e-150 536.6 338 76.6
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.9e-147 526.6 437 62.7
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 3.6e-146 522.3 421 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 1.2e-141 507.3 427 56.4
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.2e-141 507.3 320 76.2
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 2.5e-139 499.6 448 62.9
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 1.6e-138 496.9 426 57.7
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 4.0e-137 492.3 422 57.3
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 6.8e-137 491.5 482 57.9
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 3.2e-134 482.6 296 81.4
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 9.5e-131 471.1 291 79.4
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 1.5e-128 463.8 293 76.8
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 1.5e-123 447.2 294 75.9
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 1.3e-116 424.1 295 72.2
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 3.1e-105 386.3 441 47.6
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 2.6e-104 383.3 250 74.0
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 4.2e-102 375.9 301 65.1
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 9.3e-94 348.2 355 54.9
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 1.1e-89 334.7 425 41.9
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 1.0e-87 328.2 223 75.8
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 1.3e-87 327.8 229 70.3
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 3.4e-80 303.1 456 38.8
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 3.4e-72 276.6 170 80.6
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.1e-65 255.0 199 61.3
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.1e-57 228.4 153 76.5
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.1e-54 218.4 176 67.0
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 4.5e-48 196.4 409 32.8
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 7.7e-48 195.7 134 69.4
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 3.0e-44 183.7 115 76.5
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 7.0e-41 172.6 101 83.2
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 1.0e-39 168.7 104 78.8
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 2.2e-39 167.5 103 81.6
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 2.2e-39 167.5 103 81.6
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 5.0e-39 166.4 111 75.7
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 3.1e-33 147.1 75 89.3
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 2.5e-22 110.9 62 79.0
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 4.7e-13 80.1 205 25.4
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 8.1e-13 79.3 48 72.9
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 2.0e-11 74.7 46 76.1
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 2.2e-10 71.2 47 80.9
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 2.1e-08 64.7 78 47.4
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 2.1e-08 64.7 43 74.4


User provided reference genes

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