Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G166800 Populus trichocarpa HOM05D007276 ORTHO05D009222 1.1e-110 403.3 203 100.0
Sabra10G0126700 Salix brachista HOM05D007276 ORTHO05D009222 1.2e-96 356.7 202 89.6
Duzib248G1071 Durio zibethinus HOM05D007276 ORTHO05D009222 2.6e-67 259.2 203 68.0
Prupe.1G277200 Prunus persica HOM05D007276 ORTHO05D009222 1.9e-62 243.0 205 66.3
COL.COLO4_22938 Corchorus olitorius HOM05D007276 ORTHO05D009222 5.6e-62 241.5 211 64.0
Gohir.D13G076600 Gossypium hirsutum HOM05D007276 ORTHO05D009222 5.6e-62 241.5 204 63.7
Gorai.013G087300 Gossypium raimondii HOM05D007276 ORTHO05D009222 7.3e-62 241.1 204 63.2
Thecc.02G343000 Theobroma cacao HOM05D007276 ORTHO05D009222 1.1e-60 237.3 207 62.8
Gohir.A13G077100 Gossypium hirsutum HOM05D007276 ORTHO05D009222 1.8e-60 236.5 204 62.7
Lalb_Chr17g0340861 Lupinus albus HOM05D007276 ORTHO05D009222 1.8e-60 236.5 200 64.5
MD13G1069500 Malus domestica HOM05D007276 ORTHO05D009222 1.5e-59 233.4 206 63.1
TAR374G1515 Trochodendron aralioides HOM05D007276 ORTHO05D009222 2.0e-59 233.0 179 67.0
MD16G1069900 Malus domestica HOM05D007276 ORTHO05D009222 7.6e-59 231.1 205 62.4
Cc11_g12760 Coffea canephora HOM05D007276 ORTHO05D009222 1.3e-58 230.3 196 62.8
QL03p068197 Quercus lobata HOM05D007276 ORTHO05D009222 2.9e-58 229.2 202 61.4
VMungo0720G2065 Vigna mungo HOM05D007276 ORTHO05D009222 1.9e-57 226.5 199 59.3
Lalb_Chr10g0098421 Lupinus albus HOM05D007276 ORTHO05D009222 2.4e-57 226.1 205 62.0
Actinidia31910 Actinidia chinensis HOM05D007276 ORTHO05D009222 5.4e-57 224.9 204 60.3
GSVIVG01019955001 Vitis vinifera HOM05D007276 ORTHO05D009222 5.4e-57 224.9 200 64.5
FAN07G0275 Fragaria x ananassa HOM05D007276 ORTHO05D009222 9.3e-57 224.2 203 60.6
Phvul.003G045300 Phaseolus vulgaris HOM05D007276 ORTHO05D009222 1.2e-56 223.8 200 60.0
FAN22G2401 Fragaria x ananassa HOM05D007276 ORTHO05D009222 1.6e-56 223.4 203 60.6
PGR119G1244 Punica granatum HOM05D007276 ORTHO05D009222 6.0e-56 221.5 202 61.9
FAN17G1584 Fragaria x ananassa HOM05D007276 ORTHO05D009222 1.0e-55 220.7 203 60.1
Cfa008960 Carpinus fangiana HOM05D007276 ORTHO05D009222 1.7e-55 219.9 202 61.4
FvH4_4g31100 Fragaria vesca HOM05D007276 ORTHO05D009222 1.7e-55 219.9 203 60.1
FAN12G2976 Fragaria x ananassa HOM05D007276 ORTHO05D009222 1.7e-55 219.9 203 60.1
Medtr5g041910 Medicago truncatula HOM05D007276 ORTHO05D009222 3.0e-55 219.2 200 61.0
Atru.chr11.1756 Acer truncatum HOM05D007276 ORTHO05D009222 3.9e-55 218.8 159 69.8
Haze_11990 Corylus avellana HOM05D007276 ORTHO05D009222 5.1e-55 218.4 201 62.7
Eucgr.G02488 Eucalyptus grandis HOM05D007276 ORTHO05D009222 5.1e-55 218.4 208 60.1
Eucgr.L02948 Eucalyptus grandis HOM05D007276 ORTHO05D009222 5.1e-55 218.4 208 60.1
RcHm_v2.0_Chr4g0439481 Rosa chinensis HOM05D007276 ORTHO05D009222 6.6e-55 218.0 203 59.6
TWI31G0118 Tripterygium wilfordii HOM05D007276 ORTHO05D009222 6.6e-55 218.0 194 61.3
Aqoxy3G00485 Aquilegia oxysepala HOM05D007276 ORTHO05D009222 1.9e-54 216.5 201 57.7
Nitab4.5_0000040g0080 Nicotiana tabacum HOM05D007276 ORTHO05D009222 3.3e-54 215.7 201 59.2
Cpa.g.sc350.6 Carica papaya HOM05D007276 ORTHO05D009222 5.6e-54 214.9 172 65.1
Glyma.01G050900 Glycine max HOM05D007276 ORTHO05D009222 5.6e-54 214.9 155 68.4
vmacro01271 Vaccinium macrocarpon HOM05D007276 ORTHO05D009222 7.3e-54 214.5 202 59.4
PSO063G4223 Papaver somniferum HOM05D007276 ORTHO05D009222 9.6e-54 214.2 187 60.4
Psat2g116600 Pisum sativum HOM05D007276 ORTHO05D009222 9.6e-54 214.2 200 57.5
DCAR_007169 Daucus carota HOM05D007276 ORTHO05D009222 2.1e-53 213.0 189 56.6
ECA233G1360 Erigeron canadensis HOM05D007276 ORTHO05D009222 2.1e-53 213.0 199 57.8
PSO832G3155 Papaver somniferum HOM05D007276 ORTHO05D009222 2.8e-53 212.6 172 64.5
Nitab4.5_0004300g0170 Nicotiana tabacum HOM05D007276 ORTHO05D009222 3.6e-53 212.2 201 58.2
CSS0029134 Camellia sinensis var. sinensis HOM05D007276 ORTHO05D009222 4.8e-53 211.8 215 54.9
CAN.G1596.1 Capsicum annuum HOM05D007276 ORTHO05D009222 6.2e-53 211.5 201 56.2
arahy.Tifrunner.gnm1.ann1.T46WBJ Arachis hypogaea HOM05D007276 ORTHO05D009222 8.1e-53 211.1 147 71.4
arahy.Tifrunner.gnm1.ann1.WM01M4 Arachis hypogaea HOM05D007276 ORTHO05D009222 8.1e-53 211.1 147 71.4
arahy.Tifrunner.gnm1.ann1.I21UC1 Arachis hypogaea HOM05D007276 ORTHO05D009222 1.4e-52 210.3 141 72.3
Lsat_1_v5_gn_8_50900 Lactuca sativa HOM05D007276 ORTHO05D009222 1.8e-52 209.9 193 59.1
CANSAT64G2297 Cannabis sativa HOM05D007276 ORTHO05D009222 4.0e-52 208.8 176 61.4
SalBow8G1336 Salvia bowleyana HOM05D007276 ORTHO05D009222 1.2e-51 207.2 158 65.2
CSS0045447 Camellia sinensis var. sinensis HOM05D007276 ORTHO05D009222 2.6e-51 206.1 207 56.5
ClCG05G000900 Citrullus lanatus HOM05D007276 ORTHO05D009222 7.6e-51 204.5 194 57.7
PGSC0003DMG400018434 Solanum tuberosum HOM05D007276 ORTHO05D009222 7.6e-51 204.5 201 55.2
CiPaw.06G087100 Carya illinoinensis HOM05D007276 ORTHO05D009222 1.3e-50 203.8 140 72.1
Peaxi162Scf00222g00618 Petunia axillaris HOM05D007276 ORTHO05D009222 1.3e-50 203.8 202 56.4
HanXRQChr08g0210761 Helianthus annuus HOM05D007276 ORTHO05D009222 2.2e-50 203.0 158 64.6
EL10Ac6g13239 Beta vulgaris HOM05D007276 ORTHO05D009222 3.8e-50 202.2 196 54.6
Lj2g0006863 Lotus japonicus HOM05D007276 ORTHO05D009222 4.9e-50 201.8 126 76.2
Solyc05g007780.3 Solanum lycopersicum HOM05D007276 ORTHO05D009222 4.9e-50 201.8 201 54.7
Sopen05g003640 Solanum pennellii HOM05D007276 ORTHO05D009222 6.4e-50 201.4 201 54.2
Sp1g12490 Schrenkiella parvula HOM05D007276 ORTHO05D009222 1.9e-49 199.9 162 63.0
Lj3A1035T52 Lonicera japonica HOM05D007276 ORTHO05D009222 2.4e-49 199.5 177 58.2
BcaB08g34371 Brassica carinata HOM05D007276 ORTHO05D009222 3.2e-49 199.1 203 56.2
CsaV3_3G008130 Cucumis sativus L. HOM05D007276 ORTHO05D009222 3.2e-49 199.1 196 56.6
Rhsim12G0065000 Rhododendron simsii HOM05D007276 ORTHO05D009222 9.3e-49 197.6 196 55.1
ATR0564G040 Amborella trichopoda HOM05D007276 ORTHO05D009222 3.5e-48 195.7 184 53.3
A09p62430 Brassica napus HOM05D007276 ORTHO05D009222 6.0e-48 194.9 202 55.4
C08p45990 Brassica napus HOM05D007276 ORTHO05D009222 6.0e-48 194.9 202 55.4
BraA09t41607Z Brassica rapa HOM05D007276 ORTHO05D009222 6.0e-48 194.9 202 55.4
Thhalv10008853m.g Eutrema salsugineum HOM05D007276 ORTHO05D009222 6.0e-48 194.9 203 54.2
BolC8t52150H Brassica oleracea HOM05D007276 ORTHO05D009222 7.9e-48 194.5 204 55.4
MELO3C006032.2 Cucumis melo HOM05D007276 ORTHO05D009222 1.0e-47 194.1 197 55.3
BcaC07g41598 Brassica carinata HOM05D007276 ORTHO05D009222 1.3e-47 193.7 203 55.7
CDE07G1248 Ceratophyllum demersum HOM05D007276 ORTHO05D009222 1.7e-47 193.4 199 55.8
AL1G26020 Arabidopsis lyrata HOM05D007276 ORTHO05D009222 2.3e-47 193.0 199 54.8
Sed0023794 Sechium edule HOM05D007276 ORTHO05D009222 2.3e-47 193.0 199 55.8
CARHR014540 Cardamine hirsuta HOM05D007276 ORTHO05D009222 5.1e-47 191.8 201 52.2
Migut.E00079 Erythranthe guttata HOM05D007276 ORTHO05D009222 5.1e-47 191.8 145 65.5
A06p10150 Brassica napus HOM05D007276 ORTHO05D009222 8.7e-47 191.0 204 53.4
BraA06t24199Z Brassica rapa HOM05D007276 ORTHO05D009222 8.7e-47 191.0 204 53.4
Ah.02g129580 Amaranthus hybridus HOM05D007276 ORTHO05D009222 1.1e-46 190.7 157 61.1
AT1G14150 Arabidopsis thaliana HOM05D007276 ORTHO05D009222 1.5e-46 190.3 200 54.5
AUR62005819 Chenopodium quinoa HOM05D007276 ORTHO05D009222 1.9e-46 189.9 149 63.8
Aa31LG1G940 Aethionema arabicum HOM05D007276 ORTHO05D009222 5.6e-46 188.3 159 62.9
BcaC05g25313 Brassica carinata HOM05D007276 ORTHO05D009222 5.6e-46 188.3 203 52.2
THA.LOC104805943 Tarenaya hassleriana HOM05D007276 ORTHO05D009222 5.6e-46 188.3 127 70.9
BolC5t29950H Brassica oleracea HOM05D007276 ORTHO05D009222 2.1e-45 186.4 204 52.5
Ciclev10033819m.g Citrus clementina HOM05D007276 ORTHO05D009222 2.1e-45 186.4 198 52.0
unitig_21.g20855 Utricularia gibba HOM05D000077 ORTHO05D005617 1.1e-44 184.1 137 62.8
Manes.05G104400 Manihot esculenta HOM05D007276 ORTHO05D009222 4.0e-44 182.2 179 59.2
Carub.0001s1383 Capsella rubella HOM05D007276 ORTHO05D009222 5.3e-44 181.8 124 69.4
Ca_04824_v3 Cicer arietinum L. HOM05D007276 ORTHO05D009222 1.6e-40 170.2 174 57.5
Zm00001eb244980 Zea mays HOM05D007276 ORTHO05D009222 6.7e-39 164.9 132 58.3
Os02g0578400 Oryza sativa ssp. japonica HOM05D007276 ORTHO05D009222 1.5e-38 163.7 122 61.5
TPR.G34704 Trifolium pratense HOM05D007276 ORTHO05D009222 1.3e-37 160.6 169 53.3
Dinv16671 Davidia involucrata HOM05D007276 ORTHO05D009222 1.7e-34 150.2 104 69.2
BolC5t29943H Brassica oleracea HOM05D007276 ORTHO05D009222 3.3e-30 136.0 207 42.5
Oeu005757.1 Olea europaea HOM05D007276 ORTHO05D009222 1.4e-28 130.6 84 71.4
MBI10_g28011_MAGBIO Magnolia biondii HOM05D002670 ORTHO05D009222 1.1e-25 120.9 87 64.4
Zm00001eb183170 Zea mays HOM05D007276 ORTHO05D009222 3.5e-24 115.9 99 53.5
AUR62032813 Chenopodium quinoa HOM05D007276 ORTHO05D009222 4.6e-24 115.5 168 46.4
C05p11930 Brassica napus HOM05D007276 ORTHO05D009222 3.7e-21 105.9 148 45.9
MBI13_g20496_MAGBIO Magnolia biondii HOM05D007276 ORTHO05D009222 4.8e-21 105.5 121 47.9
Duzib268G0683 Durio zibethinus HOM05D007276 ORTHO05D009222 1.7e-18 97.1 116 51.7
Aqoxy1G00315 Aquilegia oxysepala HOM05D007276 ORTHO05D009222 2.7e-16 89.7 111 49.5
Potri.008G088750 Populus trichocarpa HOM05D007276 ORTHO05D332155 1.5e-11 73.9 41 90.2
TWI63G1530 Tripterygium wilfordii HOM05D004209 ORTHO05D004970 5.9e-11 72.0 178 25.8
Sed0006596 Sechium edule HOM05D004209 ORTHO05D004970 1.0e-10 71.2 191 26.2
C01p15220 Brassica napus HOM05D004209 ORTHO05D004970 2.2e-10 70.1 206 23.3
CDE02G0449 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 2.2e-10 70.1 220 25.5
BcaC09g51238 Brassica carinata HOM05D004209 ORTHO05D004970 2.9e-10 69.7 206 22.8
BolC1t01473H Brassica oleracea HOM05D004209 ORTHO05D004970 2.9e-10 69.7 207 22.7
BcaNung03829 Brassica carinata HOM05D004209 ORTHO05D004970 3.8e-10 69.3 206 22.3
A01p12630 Brassica napus HOM05D004209 ORTHO05D004970 5.0e-10 68.9 206 22.3
BraA01t01206Z Brassica rapa HOM05D004209 ORTHO05D004970 5.0e-10 68.9 209 22.0
ClCG03G005130 Citrullus lanatus HOM05D004209 ORTHO05D004970 6.5e-10 68.6 189 27.5
MELO3C002510.2 Cucumis melo HOM05D004209 ORTHO05D004970 8.5e-10 68.2 189 27.0
Aqoxy4G02127 Aquilegia oxysepala HOM05D005228 ORTHO05D006208 1.4e-09 67.4 120 29.2
Thhalv10026172m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 1.4e-09 67.4 206 21.4
Gohir.D06G125800 Gossypium hirsutum HOM05D004209 ORTHO05D004970 1.4e-09 67.4 192 26.6
CsaV3_1G011330 Cucumis sativus L. HOM05D004209 ORTHO05D004970 1.9e-09 67.0 199 27.1
Gorai.010G146500 Gossypium raimondii HOM05D004209 ORTHO05D004970 2.5e-09 66.6 192 26.6
Thecc.06G208500 Theobroma cacao HOM05D004209 ORTHO05D004970 3.2e-09 66.2 190 24.2
Ah.14g088480 Amaranthus hybridus HOM05D004209 ORTHO05D004970 5.5e-09 65.5 172 25.0
ATR1088G002 Amborella trichopoda HOM05D005228 ORTHO05D006208 5.5e-09 65.5 185 26.5
CAN.G424.102 Capsicum annuum HOM05D004209 ORTHO05D004970 7.2e-09 65.1 183 23.0
PSO210G5932 Papaver somniferum HOM05D004209 ORTHO05D004970 9.4e-09 64.7 112 25.9
PSO832G1281 Papaver somniferum HOM05D004209 ORTHO05D004970 9.4e-09 64.7 112 25.9
TAR624G0645 Trochodendron aralioides HOM05D004209 ORTHO05D004970 9.4e-09 64.7 116 27.6
CiPaw.09G080300 Carya illinoinensis HOM05D004209 ORTHO05D004970 1.2e-08 64.3 178 25.3
Aqoxy4G02128 Aquilegia oxysepala HOM05D004209 ORTHO05D004970 2.1e-08 63.5 116 27.6
PGSC0003DMG400021727 Solanum tuberosum HOM05D004209 ORTHO05D004970 2.1e-08 63.5 183 23.0
Gohir.A06G121600 Gossypium hirsutum HOM05D004209 ORTHO05D004970 3.6e-08 62.8 192 25.5
Nn1g03715 Nelumbo nucifera HOM05D004209 ORTHO05D004970 3.6e-08 62.8 116 25.9
Zm00001eb323460 Zea mays HOM05D004209 ORTHO05D004970 3.6e-08 62.8 116 25.9
Zm00001eb106430 Zea mays HOM05D004209 ORTHO05D004970 4.7e-08 62.4 115 26.1
Sabra04G0017800 Salix brachista HOM05D004209 ORTHO05D004970 6.1e-08 62.0 116 26.7
Actinidia10703 Actinidia chinensis HOM05D005228 ORTHO05D006208 3.9e-07 59.3 138 26.8
TWI38G0662 Tripterygium wilfordii HOM05D004209 ORTHO05D004970 5.1e-07 58.9 116 25.9
Migut.M01815 Erythranthe guttata HOM05D005228 ORTHO05D006208 6.7e-07 58.5 121 27.3
CDE05G2391 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 2.6e-06 56.6 173 23.7
vmacro09750 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 3.3e-06 56.2 121 24.8
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 3.3e-06 56.2 121 24.8
QL05p077152 Quercus lobata HOM05D004209 ORTHO05D004970 4.4e-06 55.8 116 24.1
QL93p0073_1246 Quercus lobata HOM05D004209 ORTHO05D004970 5.7e-06 55.5 116 24.1
Pp3c5_4110 Physcomitrium patens HOM05D004209 ORTHO05D004970 7.4e-06 55.1 113 24.8


User provided reference genes

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