Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.3e-127 458.4 233 100.0
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.8e-110 402.1 232 90.9
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 1.0e-107 393.7 281 76.2
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 8.6e-107 390.6 318 67.3
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 7.0e-93 344.4 232 76.3
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.3e-83 312.8 229 71.6
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 2.3e-83 312.8 231 70.1
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 4.3e-82 308.5 228 71.1
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.3e-82 308.5 230 72.6
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.6e-81 306.6 230 70.9
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 1.6e-81 306.6 229 72.1
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 2.8e-81 305.8 229 70.7
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-80 303.9 229 70.7
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 6.8e-80 301.2 229 70.3
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.2e-79 300.4 229 68.6
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.0e-79 299.7 228 68.0
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.0e-79 299.7 230 70.4
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.4e-79 298.9 229 68.6
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.4e-79 298.9 229 68.6
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.4e-79 298.9 232 69.0
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 9.9e-79 297.4 230 69.1
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.2e-78 296.2 229 69.4
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.9e-78 295.0 229 68.1
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 4.9e-78 295.0 228 68.4
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 8.4e-78 294.3 229 67.7
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 1.4e-77 293.5 229 68.1
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 1.4e-77 293.5 230 67.4
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.1e-77 292.0 229 67.7
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.4e-77 291.6 228 67.5
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 9.2e-77 290.8 228 67.1
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 2.7e-76 289.3 230 67.8
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 6.0e-76 288.1 229 67.7
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 7.8e-76 287.7 231 66.2
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.3e-75 287.0 231 66.2
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 3.9e-75 285.4 228 66.2
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 5.1e-75 285.0 231 66.2
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.5e-74 283.5 231 65.8
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.3e-74 282.3 220 69.5
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.6e-74 281.6 227 67.0
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 9.6e-74 280.8 238 65.1
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.6e-73 278.9 231 65.4
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 4.7e-73 278.5 232 65.9
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 4.7e-73 278.5 229 62.9
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 6.2e-73 278.1 229 62.9
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 1.1e-72 277.3 229 62.9
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 1.4e-72 276.9 232 64.7
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.8e-72 276.6 229 63.8
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.8e-72 276.6 238 64.7
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.4e-72 276.2 256 59.4
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 2.4e-72 276.2 230 63.5
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.4e-72 276.2 227 67.0
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 3.1e-72 275.8 229 62.4
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.5e-71 273.5 228 64.5
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 5.8e-71 271.6 234 65.0
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 9.9e-71 270.8 231 64.9
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 9.9e-71 270.8 233 64.4
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 3.8e-70 268.9 233 64.8
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 4.9e-70 268.5 208 66.8
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 8.4e-70 267.7 230 61.7
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 8.4e-70 267.7 229 63.8
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 1.4e-69 266.9 226 65.0
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.4e-69 266.9 231 61.9
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 7.1e-69 264.6 229 63.3
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 3.5e-68 262.3 237 61.6
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 4.6e-68 261.9 231 64.5
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 1.7e-67 260.0 227 61.2
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.7e-67 260.0 227 61.7
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.7e-67 260.0 228 60.1
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 2.3e-67 259.6 235 63.4
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 3.9e-67 258.8 234 63.7
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 3.9e-67 258.8 232 62.9
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 3.9e-67 258.8 309 49.8
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 5.1e-67 258.5 230 58.3
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 6.6e-67 258.1 181 71.8
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 8.7e-67 257.7 176 75.6
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.1e-66 257.3 221 64.7
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.9e-66 256.5 228 61.4
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 1.9e-66 256.5 227 62.1
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 2.5e-66 256.1 230 63.0
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 4.3e-66 255.4 228 60.1
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 5.6e-66 255.0 229 61.1
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 7.3e-66 254.6 231 63.2
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 7.3e-66 254.6 235 60.4
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 9.6e-66 254.2 228 62.7
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 9.6e-66 254.2 228 62.7
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 9.6e-66 254.2 230 63.0
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-65 253.4 230 62.6
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 2.1e-65 253.1 230 60.4
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 4.8e-65 251.9 229 58.5
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 4.8e-65 251.9 236 59.3
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 6.2e-65 251.5 226 62.8
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 8.1e-65 251.1 220 60.0
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.1e-64 250.8 197 66.0
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.4e-64 250.4 232 61.6
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.4e-64 250.4 235 60.4
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.8e-64 250.0 213 64.8
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 2.4e-64 249.6 231 61.9
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 5.3e-64 248.4 228 59.6
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.0e-63 246.5 202 66.8
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.4e-63 245.7 206 64.6
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 3.4e-63 245.7 229 58.5
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 3.4e-63 245.7 229 58.5
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-62 243.8 231 61.5
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 6.4e-62 241.5 230 60.0
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 1.9e-61 240.0 185 66.5
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 2.7e-60 236.1 232 57.8
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 4.6e-60 235.3 185 65.9
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.3e-59 233.8 231 58.0
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 8.7e-59 231.1 262 53.1
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 2.5e-58 229.6 229 56.8
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 2.5e-58 229.6 234 56.4
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 3.3e-58 229.2 162 72.8
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 3.7e-57 225.7 248 54.4
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.8e-56 223.4 233 54.9
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.0e-56 222.2 229 54.6
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 4.0e-56 222.2 229 54.6
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 9.0e-56 221.1 226 56.6
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 9.9e-55 217.6 252 52.4
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 2.2e-54 216.5 220 59.1
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 3.8e-54 215.7 198 62.1
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 8.4e-54 214.5 179 67.0
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 8.4e-54 214.5 237 52.3
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-52 210.7 163 66.3
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.2e-52 210.7 231 55.0
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 3.3e-50 202.6 235 50.6
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 7.4e-50 201.4 213 54.9
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 3.7e-49 199.1 216 54.2
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 5.3e-48 195.3 230 51.3
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 9.0e-48 194.5 228 50.0
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 1.2e-47 194.1 135 72.6
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.7e-46 190.3 230 50.4
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.7e-46 190.3 212 53.8
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 4.9e-46 188.7 229 48.9
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 3.2e-45 186.0 210 52.9
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.8e-43 180.3 230 48.3
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.1e-42 177.6 173 58.4
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 1.3e-41 174.1 127 67.7
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 2.9e-38 162.9 99 81.8
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 6.5e-38 161.8 155 59.4
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 1.6e-36 157.1 108 72.2
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 7.9e-36 154.8 152 59.9
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.2e-33 146.7 131 61.8
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 3.7e-33 146.0 132 63.6
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 4.1e-32 142.5 221 44.8
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 5.3e-32 142.1 214 43.0
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.4e-29 134.0 186 46.8
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.5e-29 132.1 99 62.6
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.7e-28 129.8 144 52.1
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 9.1e-24 114.8 71 81.7
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 2.6e-23 113.2 77 74.0
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 8.0e-20 101.7 94 61.7
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 8.0e-20 101.7 94 61.7
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.0e-19 101.3 64 81.2
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.0e-14 84.7 62 62.9
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 2.5e-13 80.1 132 35.6
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 3.6e-12 76.3 101 39.6
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 9.7e-10 68.2 115 36.5
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 1.6e-07 60.8 71 47.9


User provided reference genes

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