Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 0.0e+00 1228.0 626 100.0
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 0.0e+00 1086.6 626 89.6
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.0e-235 819.3 629 68.5
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 3.0e-231 805.4 621 66.5
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 5.1e-231 804.7 639 67.8
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.1e-230 803.5 639 67.8
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.7e-229 798.5 631 67.0
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 6.3e-229 797.7 631 66.6
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.8e-228 796.2 634 66.9
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 3.4e-227 792.0 634 66.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 9.3e-225 783.9 627 64.8
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 4.6e-224 781.6 626 64.1
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 4.6e-224 781.6 639 64.3
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.0e-223 780.4 626 64.9
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-223 780.0 626 67.1
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 3.9e-223 778.5 622 65.3
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 8.7e-223 777.3 627 64.9
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 5.7e-222 774.6 633 64.9
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 1.8e-220 769.6 644 64.1
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.1e-220 768.8 626 62.9
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 6.9e-220 767.7 626 65.2
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 9.0e-220 767.3 628 63.4
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 1.1e-217 760.4 624 62.2
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.9e-217 759.6 633 64.0
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 3.2e-217 758.8 628 64.0
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 4.2e-217 758.4 633 63.2
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.2e-216 756.9 609 63.2
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.2e-216 756.9 626 63.3
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 6.1e-216 754.6 629 64.1
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.4e-215 753.4 629 64.1
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.4e-215 753.4 627 63.8
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 3.9e-215 751.9 634 62.8
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 5.1e-215 751.5 633 62.1
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 5.1e-215 751.5 630 63.0
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 3.3e-214 748.8 629 62.3
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 1.3e-213 746.9 624 61.5
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.3e-213 746.9 627 63.6
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.2e-213 746.1 630 63.8
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.8e-212 743.0 627 62.5
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 3.1e-212 742.3 630 62.9
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 5.3e-212 741.5 624 61.1
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.2e-211 740.3 632 61.7
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.5e-211 740.0 629 61.5
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 4.5e-211 738.4 628 64.2
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 6.5e-210 734.6 629 61.8
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.4e-209 733.4 609 62.4
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 5.5e-209 731.5 626 61.3
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.8e-207 726.5 629 60.4
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 3.0e-207 725.7 624 59.9
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 3.0e-207 725.7 627 61.6
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 2.6e-206 722.6 578 66.4
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 2.6e-206 722.6 624 60.7
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 4.4e-206 721.8 624 60.6
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 5.7e-206 721.5 629 60.1
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 6.3e-205 718.0 631 61.3
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.1e-204 717.2 630 61.6
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.1e-204 715.3 627 61.4
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.6e-203 713.4 578 65.6
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 2.0e-203 713.0 624 59.0
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 3.5e-203 712.2 628 61.0
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 7.7e-203 711.1 624 59.9
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 1.7e-202 709.9 624 59.9
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 6.5e-202 708.0 626 59.9
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.5e-201 706.8 624 59.6
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 4.2e-201 705.3 645 58.0
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 1.6e-200 703.4 617 59.8
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 2.1e-200 703.0 624 58.2
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 6.1e-200 701.4 615 60.2
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 3.0e-199 699.1 630 58.3
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 4.0e-199 698.7 635 59.5
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 4.4e-198 695.3 603 62.2
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 7.5e-198 694.5 629 57.6
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 2.8e-197 692.6 626 59.7
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 6.3e-197 691.4 652 59.2
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 6.3e-197 691.4 630 57.6
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.4e-196 690.3 616 57.1
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.1e-196 688.7 631 59.3
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.6e-195 686.8 625 58.2
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 3.8e-194 682.2 620 57.3
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.0e-194 681.8 639 59.0
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 4.2e-193 678.7 690 55.9
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 9.4e-193 677.6 626 56.7
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 2.1e-192 676.4 626 56.7
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.8e-191 673.3 677 53.5
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 4.0e-191 672.2 626 59.1
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.5e-190 670.2 631 59.0
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.7e-189 665.6 648 54.2
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.9e-187 658.3 639 58.2
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 5.9e-187 658.3 737 51.7
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.5e-185 652.9 649 57.3
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 6.1e-184 648.3 660 53.8
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.4e-183 647.1 628 55.6
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 8.8e-183 644.4 628 55.6
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 9.8e-182 641.0 635 55.1
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 7.0e-180 634.8 738 48.6
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.3e-178 630.6 526 63.7
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.2e-176 624.0 626 56.7
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 6.8e-175 618.2 609 56.7
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.4e-172 610.5 627 55.8
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.1e-168 596.7 638 50.9
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.3e-162 576.6 631 49.1
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 9.5e-161 571.2 576 50.9
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.9e-156 557.0 602 49.0
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.5e-155 552.7 661 52.2
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 7.8e-155 551.6 601 48.6
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 6.6e-146 521.9 507 54.4
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 3.9e-138 496.1 398 65.6
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.3e-121 439.9 418 57.7
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 8.4e-117 425.2 324 62.3
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-116 424.5 416 56.7
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.9e-113 414.1 405 56.5
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.0e-110 404.1 416 54.6
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.0e-110 404.1 337 58.5
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.2e-108 396.7 418 54.1
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 4.2e-108 396.4 388 53.4
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.9e-105 387.5 450 49.1
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.3e-105 386.7 452 49.8
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.3e-105 386.7 418 53.6
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.4e-102 376.7 420 51.4
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-94 351.3 408 50.0
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.6e-91 340.1 419 48.0
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.5e-84 318.2 534 35.8
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 7.2e-84 315.8 205 76.1
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 6.7e-82 309.3 566 32.7
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.8e-72 277.3 526 31.6
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.7e-69 268.1 521 32.1
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 2.8e-67 260.8 254 55.5
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.4e-63 248.4 582 32.6
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 3.7e-56 223.8 557 27.8
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 3.7e-56 223.8 428 36.9
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 2.7e-54 217.6 167 64.1
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.2e-51 208.8 240 49.6
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 1.8e-50 204.9 211 57.8
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.5e-49 201.8 240 49.2
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.7e-37 161.8 135 61.5
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 2.4e-34 151.4 109 67.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.3e-29 135.6 104 63.5
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.2e-27 129.0 96 66.7
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.4e-26 124.8 101 62.4
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 2.9e-24 117.9 152 41.4
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.7e-22 111.3 100 55.0
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.5e-22 110.9 107 53.3
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 5.8e-17 93.6 89 52.8
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.4e-15 88.2 96 40.6
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 4.6e-14 84.0 171 38.0
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.8e-13 82.0 74 56.8
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 4.3e-12 77.4 86 44.2
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 4.8e-11 73.9 63 54.0
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 4.8e-11 73.9 63 54.0
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.8e-11 73.9 44 72.7
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.8e-11 73.9 44 72.7
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.1e-10 71.2 48 68.8
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 3.4e-09 67.8 105 43.8
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 4.5e-09 67.4 63 50.8


User provided reference genes

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