Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 0.0e+00 1348.6 669 100.0
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.9e-263 912.5 686 69.4
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 2.7e-262 908.7 686 69.1
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 2.3e-253 879.0 674 69.1
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 1.9e-252 875.9 666 68.0
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 2.8e-251 872.1 683 66.8
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 3.6e-251 871.7 644 69.7
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 3.1e-250 868.6 671 67.1
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 5.3e-250 867.8 668 67.4
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.7e-248 862.8 669 67.7
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 1.1e-247 860.1 672 65.6
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 3.1e-242 842.0 678 64.9
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 6.4e-240 834.3 679 64.8
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 2.7e-238 828.9 673 66.4
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 1.3e-237 826.6 680 64.7
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 5.1e-237 824.7 672 63.8
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 1.1e-236 823.5 653 66.0
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 1.1e-236 823.5 649 65.9
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 4.3e-236 821.6 668 64.1
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 1.3e-235 820.1 674 65.4
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.6e-235 819.7 672 65.5
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 1.1e-234 817.0 675 64.0
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.5e-233 813.1 676 65.5
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.5e-233 813.1 669 63.8
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.5e-233 813.1 669 64.0
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 2.6e-233 812.4 669 64.6
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 5.8e-233 811.2 673 63.9
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 7.6e-233 810.8 674 65.0
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 2.9e-232 808.9 669 63.1
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 3.8e-232 808.5 685 61.5
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.4e-231 806.6 696 63.4
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 7.1e-231 804.3 677 62.3
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.5e-228 795.8 710 61.4
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 7.4e-228 794.3 681 60.6
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 1.3e-227 793.5 685 61.5
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 4.8e-227 791.6 672 63.5
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 5.3e-226 788.1 722 59.8
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 1.5e-225 786.6 674 62.2
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 2.6e-225 785.8 671 62.7
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 4.5e-225 785.0 681 62.3
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 1.7e-224 783.1 660 62.6
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 1.2e-222 776.9 715 59.4
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 1.3e-221 773.5 676 60.9
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 1.3e-219 766.9 714 58.7
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 2.2e-219 766.1 673 60.0
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 3.1e-218 762.3 673 60.5
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 5.3e-218 761.5 673 59.6
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.2e-217 760.4 679 59.5
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.5e-217 760.0 645 60.9
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 3.4e-217 758.8 675 60.9
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.0e-216 757.3 674 59.5
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 1.0e-216 757.3 671 60.5
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 5.0e-216 755.0 642 61.7
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 5.0e-216 755.0 694 57.5
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 1.1e-215 753.8 680 60.3
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 9.4e-215 750.7 671 60.2
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 2.1e-214 749.6 673 59.3
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 3.6e-214 748.8 674 58.9
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 1.5e-212 743.4 667 61.2
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 2.8e-211 739.2 688 59.3
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 1.5e-209 733.4 667 59.2
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 2.6e-209 732.6 667 60.1
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 5.9e-209 731.5 667 60.1
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 1.3e-208 730.3 666 59.8
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 2.9e-208 729.2 673 58.4
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 3.8e-208 728.8 667 59.7
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 8.5e-208 727.6 673 59.1
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 1.9e-207 726.5 667 59.7
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 4.2e-207 725.3 667 59.1
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 1.6e-206 723.4 667 59.4
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 1.4e-205 720.3 641 58.8
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 6.7e-205 718.0 674 58.8
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 6.7e-205 718.0 564 64.5
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 1.0e-200 704.1 654 57.8
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 5.0e-200 701.8 630 58.4
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 3.6e-198 695.7 670 57.3
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 1.8e-197 693.3 663 57.5
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 4.0e-197 692.2 749 53.0
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 5.2e-197 691.8 643 57.2
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 2.2e-195 686.4 543 64.5
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 6.5e-192 674.9 683 53.3
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 3.2e-191 672.5 683 54.8
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 2.4e-186 656.4 670 52.5
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 8.3e-171 604.7 554 57.4
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 2.1e-166 590.1 673 50.7
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.3e-165 586.6 415 71.8
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 7.8e-161 571.6 436 67.7
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 3.6e-158 562.8 434 65.4
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 4.0e-157 559.3 692 45.5
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 9.5e-151 538.1 640 47.8
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 2.4e-149 533.5 396 68.7
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 6.8e-149 531.9 709 45.4
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.1e-133 481.5 648 46.0
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 3.9e-128 463.0 286 78.0
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 1.6e-126 457.6 484 51.7
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 6.4e-123 445.7 489 47.4
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.7e-113 413.7 467 51.6
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 5.9e-108 396.0 469 48.4
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 2.0e-100 370.9 561 42.1
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 7.7e-100 369.0 255 74.5
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 2.2e-94 350.9 271 67.9
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 7.7e-92 342.4 405 49.1
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 5.2e-88 329.7 195 81.0
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.5e-87 328.2 263 67.7
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 5.9e-84 316.2 589 35.0
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.9e-82 311.2 356 51.1
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 3.0e-80 303.9 390 42.6
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.0e-79 301.2 187 78.1
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 9.1e-77 292.4 181 80.7
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.7e-76 290.8 654 34.6
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.4e-72 278.5 254 58.7
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 2.3e-72 277.7 286 54.9
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.5e-71 275.0 254 58.3
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 4.8e-70 270.0 187 72.7
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 6.3e-70 269.6 183 71.0
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 2.5e-66 257.7 150 80.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 4.2e-66 256.9 363 40.8
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 1.7e-62 245.0 462 38.3
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 8.3e-62 242.7 349 42.1
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 4.6e-52 210.3 130 75.4
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 7.0e-45 186.4 216 45.8
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 5.6e-42 176.8 209 48.8
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 6.6e-35 153.3 110 63.6
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.1e-32 146.0 110 60.9
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 1.2e-31 142.5 234 40.2
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 2.4e-24 118.2 110 51.8
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 2.4e-24 118.2 151 49.7
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 4.9e-22 110.5 251 31.9
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 4.9e-22 110.5 102 52.0
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 6.2e-17 93.6 83 56.6
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 2.4e-16 91.7 113 47.8
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 2.6e-15 88.2 53 84.9
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 1.6e-12 79.0 59 67.8
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 7.9e-12 76.6 201 33.8
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 8.1e-09 66.6 52 63.5
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 1.4e-08 65.9 72 47.2
SEGI_20523 Sequoiadendron giganteum HOM05D005523 ORTHO05D000001 4.9e-06 57.4 84 32.1


User provided reference genes

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