Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 2.6e-132 475.3 230 100.0
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 4.0e-125 451.4 230 94.3
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.9e-119 432.6 227 91.6
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.3e-118 429.9 226 88.5
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.2e-118 427.6 226 88.9
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.4e-117 425.6 226 88.1
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.1e-117 425.2 226 88.1
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 9.0e-117 423.7 226 87.6
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.6e-116 422.2 226 87.6
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 5.8e-116 421.0 226 87.6
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.0e-115 420.2 226 86.7
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 3.2e-114 415.2 228 85.5
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 3.2e-114 415.2 227 85.0
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 3.2e-114 415.2 224 85.7
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 3.2e-114 415.2 224 87.5
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 9.3e-114 413.7 227 85.9
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 2.1e-113 412.5 224 87.1
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 2.1e-113 412.5 224 87.1
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.1e-113 412.5 227 84.6
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 6.0e-113 411.0 224 87.1
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 7.9e-113 410.6 226 86.7
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 7.9e-113 410.6 224 86.6
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.8e-112 409.5 224 85.7
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.8e-112 409.5 224 87.1
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.8e-112 409.5 227 84.1
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.3e-112 409.1 221 87.3
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 3.0e-112 408.7 221 87.8
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 3.0e-112 408.7 224 86.6
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 3.9e-112 408.3 223 86.5
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 3.9e-112 408.3 221 85.5
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 3.9e-112 408.3 224 85.3
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.9e-112 408.3 225 84.9
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 5.1e-112 407.9 224 86.2
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 5.1e-112 407.9 224 87.1
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 6.7e-112 407.5 227 83.7
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 8.7e-112 407.1 221 85.1
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 8.7e-112 407.1 224 86.2
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.1e-111 406.8 222 86.5
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 84.8
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.9e-111 406.0 224 85.7
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 3.3e-111 405.2 224 84.4
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 84.4
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 3.3e-111 405.2 224 85.7
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 4.3e-111 404.8 224 84.4
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 4.3e-111 404.8 224 83.5
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 4.3e-111 404.8 224 85.7
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 4.3e-111 404.8 224 85.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 7.4e-111 404.1 222 86.5
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 9.7e-111 403.7 224 83.5
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 9.7e-111 403.7 222 86.5
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 9.7e-111 403.7 224 84.8
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.6e-110 402.9 223 84.8
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.6e-110 402.9 222 83.3
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 2.2e-110 402.5 226 83.6
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 3.7e-110 401.7 224 84.4
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 4.8e-110 401.4 224 84.8
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 6.3e-110 401.0 224 83.9
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 6.3e-110 401.0 224 84.8
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.1e-109 400.2 224 85.3
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.4e-109 399.8 224 83.5
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.8e-109 399.4 221 85.1
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.8e-109 399.4 224 83.9
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 3.1e-109 398.7 221 86.0
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 3.1e-109 398.7 220 85.0
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 3.1e-109 398.7 224 83.9
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 4.1e-109 398.3 222 82.9
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 4.1e-109 398.3 222 82.9
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 4.1e-109 398.3 221 84.2
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.9e-109 397.5 224 83.9
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 6.9e-109 397.5 225 80.9
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.2e-108 396.7 224 84.4
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.5e-108 396.4 238 80.3
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 4.5e-108 394.8 228 82.5
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 4.5e-108 394.8 222 82.4
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 5.9e-108 394.4 224 83.5
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.0e-107 393.7 219 84.5
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.0e-107 393.7 219 83.1
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.0e-107 393.7 246 78.0
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 1.0e-107 393.7 224 83.0
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.3e-107 393.3 223 83.0
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.7e-107 392.9 221 83.3
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.7e-107 392.9 221 83.3
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.7e-107 392.9 221 83.3
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.7e-107 392.9 224 82.1
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 2.2e-107 392.5 210 87.6
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 84.6
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 5.0e-107 391.3 219 84.5
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.5e-107 390.6 224 81.7
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.1e-106 390.2 210 87.1
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.1e-106 390.2 219 83.6
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.4e-106 389.8 223 82.1
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.4e-106 389.8 224 82.1
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.4e-106 389.8 224 82.1
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.9e-106 389.4 219 83.6
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 4.2e-106 388.3 221 82.4
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 5.5e-106 387.9 219 82.6
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 7.2e-106 387.5 219 83.1
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 7.2e-106 387.5 221 81.0
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 9.4e-106 387.1 225 79.6
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 2.1e-105 386.0 221 81.9
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 2.7e-105 385.6 224 81.2
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.6e-105 385.2 221 80.1
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 3.6e-105 385.2 251 73.7
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.0e-104 383.6 224 83.0
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.4e-104 383.3 215 83.7
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.4e-104 383.3 224 80.8
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 3.0e-104 382.1 225 79.6
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 3.9e-104 381.7 219 82.2
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 3.9e-104 381.7 219 82.2
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 5.1e-104 381.3 219 81.7
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.5e-103 379.8 224 80.8
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 4.3e-103 378.3 218 80.7
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 5.7e-103 377.9 224 78.6
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.4e-103 377.5 279 67.7
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.8e-102 375.6 218 80.3
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 6.3e-102 374.4 226 77.0
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 2.3e-96 355.9 204 83.3
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 3.9e-96 355.1 223 70.9
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.4e-90 336.7 228 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 3.0e-88 328.9 223 67.3
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 3.3e-87 325.5 220 66.8
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 9.7e-87 323.9 223 66.4
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.1e-85 318.9 219 66.7
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.8e-80 303.1 164 89.0
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.3e-80 302.8 171 84.8
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.7e-75 286.6 169 75.7
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.4e-72 276.9 153 83.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.3e-70 270.4 160 76.2
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 6.3e-70 268.1 215 57.7
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 3.3e-66 255.8 131 87.8
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.7e-62 243.4 163 71.8
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 6.6e-59 231.5 209 54.5
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 9.5e-58 227.6 129 80.6
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.4e-56 223.8 217 50.7
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 5.8e-55 218.4 214 48.1
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 3.2e-53 212.6 111 90.1
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.2e-53 212.6 148 75.7
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.1e-50 204.1 115 79.1
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 1.2e-49 200.7 113 79.6
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.0e-43 181.0 130 60.8
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.4e-37 159.8 102 75.5
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 5.4e-37 158.7 86 80.2
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 7.3e-34 148.3 220 37.7
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 8.4e-30 134.8 97 72.2
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 5.4e-29 132.1 134 51.5
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.6e-28 130.6 75 85.3
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.5e-26 124.0 66 86.4
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 5.6e-26 122.1 99 60.6
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 8.1e-25 118.2 61 88.5
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.1e-24 116.3 78 78.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.1e-21 107.8 61 88.5
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 3.5e-20 102.8 61 85.2
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.0e-19 99.8 64 78.1
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 5.1e-19 99.0 54 81.5
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.1e-19 99.0 57 70.2
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.1e-18 97.8 64 75.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 4.3e-18 95.9 65 75.4
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.2e-17 92.0 128 46.9
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.8e-16 90.5 54 85.2
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 7.1e-13 78.6 100 45.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.7e-12 76.6 51 70.6
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.3e-09 67.8 39 76.9
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 3.4e-07 59.7 43 74.4
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 8.4e-06 55.1 35 74.3


User provided reference genes

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