Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.7e-164 582.8 331 100.0
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 3.9e-145 518.5 331 86.7
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.2e-123 445.7 332 82.5
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 2.0e-109 399.8 331 74.6
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.2e-106 390.6 334 76.0
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.6e-98 363.6 331 73.1
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 1.7e-92 343.6 333 70.9
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.0e-89 334.3 334 67.7
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 6.7e-89 331.6 334 70.7
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 8.2e-87 324.7 335 65.1
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 3.4e-85 319.3 335 63.9
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-84 317.4 333 64.9
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 5.5e-83 312.0 330 65.2
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.2e-83 311.6 335 63.0
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 7.2e-83 311.6 335 63.0
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.2e-82 310.8 333 64.6
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.7e-82 308.9 335 63.0
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.4e-81 307.4 334 68.3
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.8e-81 307.0 333 57.7
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 2.2e-76 290.0 333 66.4
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.6e-74 283.9 335 61.2
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 6.1e-74 282.0 346 59.5
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.0e-73 279.6 332 53.6
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 4.1e-70 269.2 327 61.5
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.1e-67 261.2 337 59.6
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 4.2e-67 259.2 353 58.9
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 9.4e-67 258.1 346 58.1
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.6e-66 257.3 347 60.5
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 6.1e-66 255.4 332 61.1
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 8.0e-66 255.0 332 57.8
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 8.0e-66 255.0 334 57.2
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 6.3e-63 245.4 339 61.4
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 1.8e-62 243.8 336 55.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 5.4e-62 242.3 331 56.2
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 7.0e-62 241.9 339 55.8
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.3e-60 237.7 356 57.0
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.3e-60 237.7 347 48.4
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.9e-60 236.5 264 53.8
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 4.2e-59 232.6 359 52.6
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 5.5e-59 232.3 337 51.3
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 3.6e-58 229.6 334 54.8
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 8.0e-58 228.4 342 52.9
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.4e-57 227.6 356 52.8
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 3.0e-57 226.5 332 52.7
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 6.3e-55 218.8 269 52.0
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 7.0e-54 215.3 336 42.0
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 3.5e-53 213.0 328 53.0
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.9e-51 207.2 333 46.5
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 3.3e-51 206.5 329 51.7
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.8e-50 203.4 345 51.3
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 3.6e-50 203.0 351 52.7
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.4e-49 201.1 319 53.3
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.0e-49 199.5 319 53.0
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 5.2e-49 199.1 332 53.0
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 5.2e-49 199.1 332 53.0
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.2e-49 199.1 339 49.9
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 5.2e-49 199.1 230 63.0
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 1.2e-48 198.0 334 49.4
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 1.5e-48 197.6 350 51.7
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.3e-47 194.5 341 51.3
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.7e-47 194.1 364 49.7
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 3.7e-47 193.0 336 47.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 3.2e-46 189.9 321 43.6
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 7.0e-46 188.7 323 47.7
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 7.0e-46 188.7 323 47.7
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.6e-45 187.6 346 51.4
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 7.8e-45 185.3 349 51.3
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.3e-44 184.5 346 51.4
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.7e-44 184.1 348 50.9
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.7e-44 184.1 348 50.9
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 1.7e-44 184.1 355 40.6
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 3.9e-44 183.0 336 46.1
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.1e-43 181.4 345 41.7
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 1.9e-43 180.6 355 39.2
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.5e-43 180.3 339 49.0
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 3.3e-43 179.9 339 41.9
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 9.5e-43 178.3 338 39.9
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 2.1e-42 177.2 337 44.5
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 2.8e-42 176.8 300 46.3
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 6.2e-42 175.6 310 50.6
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.4e-41 174.5 334 42.2
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 6.8e-41 172.2 329 44.1
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.5e-40 171.0 388 44.3
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 4.4e-40 169.5 387 44.4
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.2e-39 167.2 255 56.9
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.2e-39 167.2 343 41.7
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.1e-38 164.9 352 49.4
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.1e-38 162.9 312 45.2
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 5.4e-38 162.5 341 42.5
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.6e-37 161.0 321 48.3
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.3e-36 157.9 356 45.8
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.3e-36 157.9 356 45.8
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.3e-36 157.9 356 45.8
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.7e-36 157.5 310 48.7
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 6.6e-36 155.6 326 45.4
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.1e-35 154.8 348 38.8
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 7.3e-35 152.1 328 44.5
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 1.2e-34 151.4 329 40.4
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 4.7e-34 149.4 338 43.5
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 4.7e-34 149.4 347 45.2
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 8.9e-33 145.2 181 55.8
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-32 144.8 205 60.0
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 2.6e-32 143.7 344 42.2
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 4.4e-32 142.9 350 47.1
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 5.8e-32 142.5 349 43.8
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 9.8e-32 141.7 330 37.6
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-31 141.4 342 40.4
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 1.7e-31 141.0 307 36.2
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.7e-31 141.0 351 44.7
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 3.7e-31 139.8 357 41.5
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 3.2e-30 136.7 345 45.5
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 9.2e-30 135.2 351 43.3
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 9.2e-30 135.2 351 43.3
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.2e-29 134.8 330 37.9
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.1e-29 134.0 354 43.2
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 2.1e-29 134.0 351 43.3
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.1e-29 134.0 353 42.5
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.5e-29 133.3 351 41.6
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 7.8e-29 132.1 339 42.2
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.0e-28 131.7 352 42.0
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 1.3e-28 131.3 353 42.2
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.3e-28 131.3 356 45.2
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.3e-28 130.6 343 35.9
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 1.5e-27 127.9 351 43.3
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 7.3e-27 125.6 355 42.0
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 8.1e-26 122.1 348 42.0
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.1e-25 121.7 355 41.4
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.4e-25 121.3 355 41.4
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 1.5e-24 117.9 355 41.7
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 5.8e-24 115.9 350 32.9
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 9.9e-24 115.2 355 40.8
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 9.9e-24 115.2 328 36.9
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.7e-23 114.4 342 33.0
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.1e-22 111.7 288 48.6
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.2e-21 108.2 305 44.3
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.5e-21 106.7 323 41.8
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 3.0e-20 103.6 399 39.3
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 3.9e-20 103.2 336 36.9
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 5.1e-20 102.8 339 32.7
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 1.5e-19 101.3 342 40.4
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 9.6e-19 98.6 325 41.5
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 2.0e-16 90.9 351 39.0
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 1.1e-14 85.1 300 31.7
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 1.0e-12 78.6 329 34.7
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.0e-12 78.6 127 42.5
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 8.7e-12 75.5 124 43.5
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 2.5e-11 73.9 319 30.7
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 1.8e-09 67.8 274 34.7
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 3.1e-09 67.0 276 34.4
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.0e-09 66.6 157 36.3
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 2.9e-07 60.5 301 30.9
Duzib187G1785 Durio zibethinus HOM05D001488 ORTHO05D001456 8.4e-07 58.9 222 32.0
PGR119G0990 Punica granatum HOM05D001488 ORTHO05D001456 1.1e-06 58.5 229 30.1
Lj5C38T14 Lonicera japonica HOM05D001488 ORTHO05D001456 1.4e-06 58.2 225 30.7
Dinv25581 Davidia involucrata HOM05D001488 ORTHO05D001456 1.9e-06 57.8 225 30.2
Duzib192G0094 Durio zibethinus HOM05D001488 ORTHO05D001456 1.9e-06 57.8 243 30.0
Thecc.06G118100 Theobroma cacao HOM05D001488 ORTHO05D001456 3.2e-06 57.0 241 29.9
BraA10t44637Z Brassica rapa HOM05D001488 ORTHO05D012414 4.2e-06 56.6 230 27.0
Aqoxy7G01095 Aquilegia oxysepala HOM05D001488 ORTHO05D001456 7.1e-06 55.8 275 27.6
Carub.0003s1356 Capsella rubella HOM05D001488 ORTHO05D001456 7.1e-06 55.8 232 30.6
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 9.3e-06 55.5 41 70.7


User provided reference genes

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