Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G140800 Populus trichocarpa HOM05D000786 ORTHO05D000779 2.0e-36 155.2 76 100.0
Sabra10G0108800 Salix brachista HOM05D000786 ORTHO05D000779 7.0e-26 120.2 68 86.8
Manes.03G201501 Manihot esculenta HOM05D000786 ORTHO05D000779 1.3e-11 72.8 65 55.4
Nn3g21623 Nelumbo nucifera HOM05D000786 ORTHO05D000779 4.1e-10 67.8 72 52.8
TAR362G0003 Trochodendron aralioides HOM05D000786 ORTHO05D000779 5.4e-10 67.4 75 54.7
MELO3C021286.2 Cucumis melo HOM05D000786 ORTHO05D000779 7.1e-10 67.0 45 66.7
ClCG06G004770 Citrullus lanatus HOM05D000786 ORTHO05D000779 2.7e-09 65.1 63 52.4
AT2G47480 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 3.5e-09 64.7 44 59.1
Duzib212G0738 Durio zibethinus HOM05D015449 ORTHO05D017881 6.0e-09 63.9 80 45.0
CsaV3_6G022560 Cucumis sativus L. HOM05D000786 ORTHO05D000779 7.8e-09 63.5 64 51.6
Medtr1g087730 Medicago truncatula HOM05D000786 ORTHO05D000779 1.0e-08 63.2 49 61.2
CAN.G668.24 Capsicum annuum HOM05D000786 ORTHO05D000779 2.3e-08 62.0 48 58.3
Cpa.g.sc9.97 Carica papaya HOM05D000786 ORTHO05D000779 2.3e-08 62.0 63 52.4
Solyc09g075650.3 Solanum lycopersicum HOM05D000786 ORTHO05D000779 2.3e-08 62.0 48 58.3
Sopen09g030450 Solanum pennellii HOM05D000786 ORTHO05D000779 2.3e-08 62.0 48 58.3
PGSC0003DMG400031801 Solanum tuberosum HOM05D000786 ORTHO05D000779 2.3e-08 62.0 48 58.3
TAR365G1099 Trochodendron aralioides HOM05D000786 ORTHO05D000779 2.3e-08 62.0 68 50.0
Nitab4.5_0000116g0100 Nicotiana tabacum HOM05D000786 ORTHO05D000779 3.0e-08 61.6 48 58.3
Nitab4.5_0004002g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 3.0e-08 61.6 48 58.3
Lj5g0012143 Lotus japonicus HOM05D000786 ORTHO05D000779 3.9e-08 61.2 60 51.7
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 3.9e-08 61.2 59 57.6
Thecc.04G295200 Theobroma cacao HOM05D015449 ORTHO05D017881 3.9e-08 61.2 70 44.3
TAR636G3362 Trochodendron aralioides HOM05D000786 ORTHO05D000779 3.9e-08 61.2 49 59.2
Actinidia15584 Actinidia chinensis HOM05D001250 ORTHO05D000627 5.1e-08 60.8 40 67.5
BcaB02g08768 Brassica carinata HOM05D000786 ORTHO05D000779 5.1e-08 60.8 48 56.2
CSS0023598 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 5.1e-08 60.8 48 56.2
Eucgr.A02612 Eucalyptus grandis HOM05D000786 ORTHO05D000779 5.1e-08 60.8 72 44.4
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 5.1e-08 60.8 43 58.1
THA.LOC104817471 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 5.1e-08 60.8 44 59.1
TPR.G19780 Trifolium pratense HOM05D000786 ORTHO05D000779 5.1e-08 60.8 49 59.2
EL10As5g23495 Beta vulgaris HOM05D000786 ORTHO05D000779 6.6e-08 60.5 61 47.5
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 6.6e-08 60.5 46 58.7
Migut.O00780 Erythranthe guttata HOM05D000786 ORTHO05D045293 6.6e-08 60.5 73 45.2
Peaxi162Scf00001g00286 Petunia axillaris HOM05D000786 ORTHO05D000779 6.6e-08 60.5 48 58.3
PGR119G0416 Punica granatum HOM05D000786 ORTHO05D000779 6.6e-08 60.5 43 60.5
vmacro03014 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 6.6e-08 60.5 74 41.9
A05p00450 Brassica napus HOM05D000786 ORTHO05D000779 8.7e-08 60.1 46 54.3
BraA05t19043Z Brassica rapa HOM05D000786 ORTHO05D000779 8.7e-08 60.1 46 54.3
C04p00400 Brassica napus HOM05D000786 ORTHO05D000779 1.1e-07 59.7 46 54.3
BolC4t21685H Brassica oleracea HOM05D000786 ORTHO05D000779 1.1e-07 59.7 46 54.3
Thhalv10001686m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 1.1e-07 59.7 59 49.2
Manes.05G001600 Manihot esculenta HOM05D000786 ORTHO05D000779 1.1e-07 59.7 49 57.1
Ah.11g049440 Amaranthus hybridus HOM05D000786 ORTHO05D000779 1.5e-07 59.3 62 46.8
Cfa005844 Carpinus fangiana HOM05D000786 ORTHO05D000779 1.5e-07 59.3 48 60.4
DCAR_002871 Daucus carota HOM05D000786 ORTHO05D000779 1.5e-07 59.3 53 52.8
vmacro02416 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 1.5e-07 59.3 40 60.0
Atru.chr4.2955 Acer truncatum HOM05D000786 ORTHO05D000779 1.9e-07 58.9 40 67.5
Haze_05005 Corylus avellana HOM05D000786 ORTHO05D000779 1.9e-07 58.9 48 58.3
Glyma.17G227002 Glycine max HOM05D000786 ORTHO05D000779 2.5e-07 58.5 46 56.5
Prupe.1G125500 Prunus persica HOM05D039578 ORTHO05D035700 2.5e-07 58.5 57 52.6
TAR624G0578 Trochodendron aralioides HOM05D000786 ORTHO05D000779 2.5e-07 58.5 45 62.2
AUR62011842 Chenopodium quinoa HOM05D000786 ORTHO05D000779 3.3e-07 58.2 40 60.0
AUR62024685 Chenopodium quinoa HOM05D000786 ORTHO05D000779 3.3e-07 58.2 40 60.0
COL.COLO4_30688 Corchorus olitorius HOM05D000786 ORTHO05D000779 3.3e-07 58.2 60 51.7
FvH4_4g19290 Fragaria vesca HOM05D039578 ORTHO05D035700 3.3e-07 58.2 59 50.8
HanXRQChr01g0000881 Helianthus annuus HOM05D000786 ORTHO05D000779 3.3e-07 58.2 40 57.5
QL12p028929 Quercus lobata HOM05D000786 ORTHO05D000779 3.3e-07 58.2 47 57.4
Rhsim04G0232400 Rhododendron simsii HOM05D000786 ORTHO05D000779 3.3e-07 58.2 71 47.9
RcHm_v2.0_Chr4g0424301 Rosa chinensis HOM05D039578 ORTHO05D035700 3.3e-07 58.2 60 45.0
Sc13g0006300 Simmondsia chinensis HOM05D000786 ORTHO05D000779 3.3e-07 58.2 49 53.1
TWI12G0435 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 3.3e-07 58.2 57 52.6
TAR383G0541 Trochodendron aralioides HOM05D000786 ORTHO05D000779 3.3e-07 58.2 46 60.9
Cc08_g11850 Coffea canephora HOM05D000786 ORTHO05D000779 4.3e-07 57.8 53 49.1
Lalb_Chr21g0309451 Lupinus albus HOM05D000786 ORTHO05D000779 4.3e-07 57.8 44 56.8
SHI00507 Sapria himalayana HOM05D000786 ORTHO05D000779 4.3e-07 57.8 64 43.8
Sed0012854 Sechium edule HOM05D000786 ORTHO05D000779 4.3e-07 57.8 45 57.8
SEGI_03186 Sequoiadendron giganteum HOM05D000786 ORTHO05D000779 4.3e-07 57.8 40 62.5
GSVIVG01035043001 Vitis vinifera HOM05D000786 ORTHO05D000779 4.3e-07 57.8 79 45.6
CARHR172910 Cardamine hirsuta HOM05D000786 ORTHO05D000779 5.6e-07 57.4 41 53.7
ClCG10G011210 Citrullus lanatus HOM05D000786 ORTHO05D000779 5.6e-07 57.4 43 55.8
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 5.6e-07 57.4 43 58.1
Gohir.D12G130300 Gossypium hirsutum HOM05D000786 ORTHO05D000779 5.6e-07 57.4 43 58.1
MBI01_g16598_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 5.6e-07 57.4 46 58.7
Nn4g25661 Nelumbo nucifera HOM05D000786 ORTHO05D000779 5.6e-07 57.4 46 60.9
Nn8g38795 Nelumbo nucifera HOM05D000786 ORTHO05D000779 5.6e-07 57.4 46 58.7
Thecc.05G320600 Theobroma cacao HOM05D000786 ORTHO05D000779 5.6e-07 57.4 52 46.2
COL.COLO4_23268 Corchorus olitorius HOM05D000786 ORTHO05D000779 7.3e-07 57.0 74 43.2
Migut.O00976 Erythranthe guttata HOM05D000786 ORTHO05D045293 7.3e-07 57.0 74 44.6
HanXRQChr03g0071471 Helianthus annuus HOM05D000786 ORTHO05D000779 7.3e-07 57.0 46 58.7
Lsat_1_v5_gn_9_25421 Lactuca sativa HOM05D000786 ORTHO05D000779 7.3e-07 57.0 43 53.5
SGA_v2.0_scaffold376G50264 Striga asiatica HOM05D000786 ORTHO05D000779 7.3e-07 57.0 43 53.5
CsaV3_4G001090 Cucumis sativus L. HOM05D000786 ORTHO05D000779 9.6e-07 56.6 43 55.8
Duzib133G0956 Durio zibethinus HOM05D000786 ORTHO05D000779 9.6e-07 56.6 43 55.8
Gohir.D08G223500 Gossypium hirsutum HOM05D000786 ORTHO05D000779 9.6e-07 56.6 52 50.0
Gorai.004G237400 Gossypium raimondii HOM05D000786 ORTHO05D000779 9.6e-07 56.6 52 50.0
Psat6g163480 Pisum sativum HOM05D000786 ORTHO05D000779 9.6e-07 56.6 49 55.1
Rhsim13G0006500 Rhododendron simsii HOM05D000786 ORTHO05D000779 9.6e-07 56.6 43 55.8
Zm00001eb063640 Zea mays HOM05D000786 ORTHO05D000779 9.6e-07 56.6 43 60.5
AL5G45390 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 1.2e-06 56.2 41 51.2
MSTRG.1701 Avicennia marina HOM05D000786 ORTHO05D000779 1.2e-06 56.2 46 56.5
CANSAT25G1363 Cannabis sativa HOM05D000786 ORTHO05D000779 1.2e-06 56.2 49 57.1
CARHR142870 Cardamine hirsuta HOM05D000786 ORTHO05D000779 1.2e-06 56.2 44 56.8
AUR62005266 Chenopodium quinoa HOM05D000786 ORTHO05D000779 1.2e-06 56.2 64 42.2
Sc18g0002250 Simmondsia chinensis HOM05D000786 ORTHO05D000779 1.2e-06 56.2 59 49.2
TAR626G0077 Trochodendron aralioides HOM05D000786 ORTHO05D000779 1.2e-06 56.2 46 58.7
Actinidia13375 Actinidia chinensis HOM05D002110 ORTHO05D001148 1.6e-06 55.8 64 43.8
MSTRG.21668 Avicennia marina HOM05D000786 ORTHO05D000779 1.6e-06 55.8 75 42.7
CiPaw.07G114700 Carya illinoinensis HOM05D000786 ORTHO05D000779 1.6e-06 55.8 45 57.8
Ca_10303_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 1.6e-06 55.8 44 54.5
Duzib192G0994 Durio zibethinus HOM05D000786 ORTHO05D000779 1.6e-06 55.8 46 58.7
Glyma.10G015200 Glycine max HOM05D000786 ORTHO05D000779 1.6e-06 55.8 43 55.8
Gorai.008G141600 Gossypium raimondii HOM05D000786 ORTHO05D000779 1.6e-06 55.8 43 55.8
HanXRQChr10g0310181 Helianthus annuus HOM05D000786 ORTHO05D000779 1.6e-06 55.8 40 62.5
Hma1.2p1_1128F.1_g259710 Hydrangea macrophylla HOM05D000786 ORTHO05D000779 1.6e-06 55.8 46 58.7
Medtr7g109290 Medicago truncatula HOM05D000786 ORTHO05D000779 1.6e-06 55.8 48 52.1
Peaxi162Scf00207g01313 Petunia axillaris HOM05D000786 ORTHO05D000779 1.6e-06 55.8 46 58.7
Thecc.06G114900 Theobroma cacao HOM05D000786 ORTHO05D000779 1.6e-06 55.8 46 58.7
Ca_13151_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 2.1e-06 55.5 59 47.5
Ciclev10022952m.g Citrus clementina HOM05D000786 ORTHO05D000779 2.1e-06 55.5 40 57.5
Cc08_g10900 Coffea canephora HOM05D000786 ORTHO05D000779 2.1e-06 55.5 46 56.5
COL.COLO4_34670 Corchorus olitorius HOM05D015449 ORTHO05D017881 2.1e-06 55.5 64 45.3
MELO3C017928.2 Cucumis melo HOM05D000786 ORTHO05D000779 2.1e-06 55.5 43 53.5
Glyma.02G014500 Glycine max HOM05D000786 ORTHO05D000779 2.1e-06 55.5 60 48.3
Glyma.03G218000 Glycine max HOM05D000786 ORTHO05D000779 2.1e-06 55.5 43 55.8
Glyma.19G214700 Glycine max HOM05D000786 ORTHO05D000779 2.1e-06 55.5 43 53.5
Phvul.001G211500 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 2.1e-06 55.5 43 53.5
Potri.014G123600 Populus trichocarpa HOM05D000786 ORTHO05D000779 2.1e-06 55.5 43 55.8
TAR636G0468 Trochodendron aralioides HOM05D000786 ORTHO05D000779 2.1e-06 55.5 46 58.7
Atru.chr5.1054 Acer truncatum HOM05D000786 ORTHO05D000779 2.8e-06 55.1 60 48.3
Aqoxy7G04036 Aquilegia oxysepala HOM05D000786 ORTHO05D000779 2.8e-06 55.1 46 56.5
AL6G22750 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 2.8e-06 55.1 60 45.0
AT5G11970 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 2.8e-06 55.1 60 45.0
CSS0020676 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 2.8e-06 55.1 67 43.3
Carub.0005s2930 Capsella rubella HOM05D000786 ORTHO05D000779 2.8e-06 55.1 41 51.2
Ciclev10026799m.g Citrus clementina HOM05D000786 ORTHO05D000779 2.8e-06 55.1 46 56.5
Cc03_g01160 Coffea canephora HOM05D000786 ORTHO05D000779 2.8e-06 55.1 53 50.9
Duzib177G0463 Durio zibethinus HOM05D000786 ORTHO05D000779 2.8e-06 55.1 52 50.0
Gohir.A05G407000 Gossypium hirsutum HOM05D000786 ORTHO05D000779 2.8e-06 55.1 46 58.7
Gohir.A12G126900 Gossypium hirsutum HOM05D000786 ORTHO05D000779 2.8e-06 55.1 43 55.8
Gohir.D04G008600 Gossypium hirsutum HOM05D000786 ORTHO05D000779 2.8e-06 55.1 46 58.7
Gorai.012G010400 Gossypium raimondii HOM05D000786 ORTHO05D000779 2.8e-06 55.1 46 58.7
Thecc.01G309800 Theobroma cacao HOM05D000786 ORTHO05D000779 2.8e-06 55.1 43 55.8
Cpa.g.sc18.2 Carica papaya HOM05D000786 ORTHO05D000779 3.6e-06 54.7 74 40.5
Haze_25937 Corylus avellana HOM05D000786 ORTHO05D000779 3.6e-06 54.7 46 56.5
Nn6g35534 Nelumbo nucifera HOM05D000786 ORTHO05D000779 3.6e-06 54.7 46 56.5
Psat5g036120 Pisum sativum HOM05D000786 ORTHO05D000779 3.6e-06 54.7 59 45.8
Potri.005G019900 Populus trichocarpa HOM05D000786 ORTHO05D000779 3.6e-06 54.7 54 44.4
SalBow6G6591 Salvia bowleyana HOM05D000786 ORTHO05D000779 3.6e-06 54.7 42 54.8
SalBow7G2876 Salvia bowleyana HOM05D000786 ORTHO05D000779 3.6e-06 54.7 48 52.1
HPP92_009149 Vanilla planifolia HOM05D000786 ORTHO05D000779 3.6e-06 54.7 53 49.1
GSVIVG01015175001 Vitis vinifera HOM05D000786 ORTHO05D000779 3.6e-06 54.7 46 54.3
Zm00001eb111850 Zea mays HOM05D000786 ORTHO05D000779 3.6e-06 54.7 37 70.3
ATR0706G273 Amborella trichopoda HOM05D000786 ORTHO05D000779 4.7e-06 54.3 70 44.3
AL4G47040 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 4.7e-06 54.3 44 59.1
AT3G62640 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 4.7e-06 54.3 41 48.8
CSS0019360 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 4.7e-06 54.3 77 42.9
CAN.G950.2 Capsicum annuum HOM05D000786 ORTHO05D000779 4.7e-06 54.3 46 54.3
DCAR_003138 Daucus carota HOM05D000786 ORTHO05D000779 4.7e-06 54.3 46 54.3
Glyma.08G190200 Glycine max HOM05D000786 ORTHO05D000779 4.7e-06 54.3 46 56.5
Lsat_1_v5_gn_7_61401 Lactuca sativa HOM05D000786 ORTHO05D000779 4.7e-06 54.3 46 58.7
Os01g0306200 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 4.7e-06 54.3 42 64.3
Potri.003G043600 Populus trichocarpa HOM05D000786 ORTHO05D000779 4.7e-06 54.3 51 51.0
Zm00001eb396430 Zea mays HOM05D000786 ORTHO05D000779 4.7e-06 54.3 40 57.5
ATR1125G005 Amborella trichopoda HOM05D000786 ORTHO05D000779 6.2e-06 53.9 71 43.7
MSTRG.19496 Avicennia marina HOM05D000786 ORTHO05D000779 6.2e-06 53.9 58 44.8
CSS0047634 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 6.2e-06 53.9 53 50.9
CANSAT56G2683 Cannabis sativa HOM05D000786 ORTHO05D000779 6.2e-06 53.9 46 56.5
Ciclev10009884m.g Citrus clementina HOM05D000786 ORTHO05D000779 6.2e-06 53.9 46 54.3
Dinv37893 Davidia involucrata HOM05D000786 ORTHO05D000779 6.2e-06 53.9 46 58.7
Migut.B00992 Erythranthe guttata HOM05D000786 ORTHO05D000779 6.2e-06 53.9 50 48.0
Migut.E01590 Erythranthe guttata HOM05D000786 ORTHO05D000779 6.2e-06 53.9 46 54.3
Eucgr.H01070 Eucalyptus grandis HOM05D000786 ORTHO05D000779 6.2e-06 53.9 43 51.2
HanXRQChr09g0238031 Helianthus annuus HOM05D000786 ORTHO05D000779 6.2e-06 53.9 65 43.1
HanXRQChr12g0359501 Helianthus annuus HOM05D000786 ORTHO05D000779 6.2e-06 53.9 46 56.5
Lsat_1_v5_gn_5_77580 Lactuca sativa HOM05D000786 ORTHO05D000779 6.2e-06 53.9 46 56.5
Medtr1g015810 Medicago truncatula HOM05D000786 ORTHO05D000779 6.2e-06 53.9 59 47.5
Os03g0302500 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 6.2e-06 53.9 40 57.5
Phvul.010G136400 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 6.2e-06 53.9 46 56.5
Sed0011669 Sechium edule HOM05D000786 ORTHO05D000779 6.2e-06 53.9 40 55.0
SGA_v2.0_scaffold163G38016 Striga asiatica HOM05D000786 ORTHO05D000779 6.2e-06 53.9 45 53.3
Zm00001eb014190 Zea mays HOM05D000786 ORTHO05D000779 6.2e-06 53.9 71 45.1
MELO3C011461.2 Cucumis melo HOM05D000786 ORTHO05D000779 8.1e-06 53.5 40 57.5
Glyma.14G097500 Glycine max HOM05D000786 ORTHO05D000779 8.1e-06 53.5 46 52.2
Oeu025238.1 Olea europaea HOM05D000786 ORTHO05D000779 8.1e-06 53.5 48 50.0
Pp3c2_8840 Physcomitrium patens HOM05D000786 ORTHO05D000779 8.1e-06 53.5 36 63.9
Psat5g095920 Pisum sativum HOM05D000786 ORTHO05D000779 8.1e-06 53.5 48 50.0
SMO172G0046 Selaginella moellendorffii HOM05D000786 ORTHO05D000779 8.1e-06 53.5 55 47.3
Zm00001eb356950 Zea mays HOM05D000786 ORTHO05D000779 8.1e-06 53.5 40 55.0


User provided reference genes

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