Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.3e-148 528.9 269 100.0
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 3.0e-127 458.8 267 87.6
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 2.3e-116 422.5 267 80.9
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 7.8e-112 407.5 267 79.0
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 7.8e-112 407.5 267 79.0
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 1.6e-101 373.2 268 70.1
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 3.8e-98 362.1 262 69.8
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 4.2e-97 358.6 262 68.3
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 2.7e-96 355.9 262 68.3
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 8.7e-95 350.9 264 67.4
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 1.9e-94 349.7 262 66.4
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 9.6e-94 347.4 258 67.8
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 8.1e-93 344.4 262 66.0
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 1.4e-92 343.6 264 67.8
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 4.0e-92 342.0 268 67.2
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 6.9e-92 341.3 263 65.0
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 4.5e-91 338.6 262 65.3
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 9.9e-91 337.4 262 64.1
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.2e-90 336.3 250 66.8
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 3.8e-90 335.5 264 63.3
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.4e-89 333.6 266 63.2
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 3.2e-89 332.4 262 63.7
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 9.3e-89 330.9 257 64.2
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.2e-88 330.5 264 62.5
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.6e-88 330.1 264 62.5
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.6e-88 330.1 263 63.5
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 2.7e-88 329.3 264 62.9
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 7.9e-88 327.8 257 63.8
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 1.0e-87 327.4 256 64.5
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.8e-87 326.6 268 63.8
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.3e-87 326.2 256 64.5
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 3.9e-87 325.5 261 62.8
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 6.7e-87 324.7 267 61.8
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 1.1e-86 323.9 268 64.2
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.9e-86 323.2 263 62.0
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 4.3e-86 322.0 259 63.3
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 4.3e-86 322.0 268 63.1
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 7.4e-86 321.2 257 60.7
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 9.6e-86 320.9 267 61.8
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 6.2e-85 318.2 265 60.0
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 6.2e-85 318.2 268 60.8
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 6.2e-85 318.2 268 60.8
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.1e-85 317.8 272 58.5
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 8.1e-85 317.8 264 61.7
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 1.1e-84 317.4 268 57.5
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.4e-84 316.2 262 60.7
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 5.3e-84 315.1 242 63.2
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 2.6e-83 312.8 244 63.5
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 4.5e-83 312.0 259 60.2
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 4.5e-83 312.0 248 64.5
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.7e-82 310.1 263 60.5
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 1.9e-81 306.6 269 58.0
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.5e-81 306.2 257 61.1
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 7.1e-81 304.7 252 60.3
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 3.5e-80 302.4 252 60.7
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.0e-79 300.8 252 58.3
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 3.9e-79 298.9 264 59.1
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 3.9e-79 298.9 262 60.3
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 5.1e-79 298.5 267 58.8
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 8.7e-79 297.7 260 58.8
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 1.9e-78 296.6 265 58.5
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.9e-78 296.6 262 57.6
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.9e-78 296.6 254 60.2
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 2.5e-78 296.2 246 61.8
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 3.3e-78 295.8 267 59.6
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 4.3e-78 295.4 265 58.1
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 4.3e-78 295.4 245 62.0
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 9.6e-78 294.3 240 62.1
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 9.6e-78 294.3 267 59.6
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.3e-77 293.9 247 61.5
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.3e-77 293.9 245 60.8
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.6e-77 293.5 246 61.4
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.6e-77 293.5 246 61.4
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.6e-77 293.5 262 58.8
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 2.1e-77 293.1 247 61.5
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 4.8e-77 292.0 246 61.0
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 4.8e-77 292.0 267 58.4
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 1.1e-76 290.8 246 60.2
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 1.8e-76 290.0 265 57.4
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 3.1e-76 289.3 263 57.0
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 3.1e-76 289.3 267 58.4
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 6.9e-76 288.1 256 56.2
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 9.0e-76 287.7 247 61.1
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 2.2e-74 283.1 246 61.4
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 3.8e-74 282.3 258 58.5
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 5.0e-74 282.0 238 62.6
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.9e-73 280.0 257 53.7
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.2e-73 279.3 265 56.2
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 5.5e-73 278.5 232 59.9
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 9.3e-73 277.7 268 56.3
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 9.3e-73 277.7 260 57.3
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.1e-72 276.6 265 55.8
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 2.1e-72 276.6 224 61.6
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 3.6e-72 275.8 249 55.0
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.6e-72 275.8 247 57.5
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 3.6e-72 275.8 233 58.8
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.0e-71 274.2 252 55.2
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.3e-71 273.1 210 64.8
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 3.0e-71 272.7 224 60.3
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 5.7e-70 268.5 237 57.8
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 5.7e-70 268.5 242 59.5
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 1.3e-69 267.3 264 55.3
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 4.8e-69 265.4 263 56.3
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 5.3e-68 261.9 257 54.9
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 7.7e-67 258.1 282 51.1
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 3.2e-65 252.7 267 53.6
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 2.1e-64 250.0 257 51.4
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 2.7e-64 249.6 267 51.7
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 7.9e-64 248.1 245 56.7
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.6e-62 243.0 208 57.2
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 7.4e-62 241.5 239 54.8
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 2.0e-59 233.4 264 49.6
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.5e-59 232.3 205 59.0
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 5.0e-58 228.8 244 52.9
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.6e-56 223.8 216 56.0
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 7.9e-56 221.5 216 55.6
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.5e-54 217.2 158 65.2
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 2.2e-50 203.4 242 48.3
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.2e-49 199.5 235 45.5
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 3.6e-48 196.1 240 47.5
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 1.3e-42 177.6 238 42.0
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 7.5e-38 161.8 137 55.5
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.8e-37 159.1 284 39.1
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 9.1e-36 154.8 269 39.0
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.7e-35 153.3 183 45.4
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 2.7e-35 153.3 208 42.3
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.5e-34 148.7 169 47.3
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 1.5e-33 147.5 133 56.4
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.5e-33 146.7 231 35.5
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.0e-31 139.4 230 34.8
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 9.8e-30 134.8 159 45.3
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 9.8e-30 134.8 234 34.6
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 3.7e-29 132.9 220 36.8
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 1.8e-28 130.6 236 35.6
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 1.8e-28 130.6 249 34.5
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.6e-25 119.0 157 45.2
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.1e-15 88.2 86 51.2
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 4.4e-14 82.8 77 59.7
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 4.4e-14 82.8 77 59.7
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 9.2e-12 75.1 76 55.3
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.7e-11 73.6 183 31.1
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 1.1e-07 61.6 142 28.9
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 2.0e-06 57.4 92 31.5


User provided reference genes

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