Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 9.1e-146 520.4 296 100.0
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 3.5e-113 412.1 283 74.6
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 4.3e-111 405.2 280 75.0
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 2.0e-108 396.4 280 72.1
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 3.4e-108 395.6 296 70.3
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 4.4e-108 395.2 275 73.8
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.3e-107 393.7 282 74.5
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.3e-107 393.7 223 86.5
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 8.3e-107 391.0 275 72.0
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.4e-106 389.4 276 71.4
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 5.4e-106 388.3 288 71.9
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 9.2e-106 387.5 277 72.9
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.2e-105 387.1 297 68.0
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.2e-105 387.1 275 71.6
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.6e-105 386.7 263 80.6
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 2.7e-105 386.0 280 71.4
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 4.6e-105 385.2 277 72.6
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 4.6e-105 385.2 280 71.1
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 7.8e-105 384.4 290 71.0
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.7e-104 383.3 286 71.7
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 2.3e-104 382.9 282 70.6
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 3.9e-104 382.1 275 70.5
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.9e-104 382.1 275 72.7
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 6.6e-104 381.3 276 72.1
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.1e-103 380.6 223 82.1
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.1e-103 380.6 270 71.1
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.9e-103 379.8 304 66.4
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.5e-103 379.4 261 74.3
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 3.3e-103 379.0 274 71.2
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 4.3e-103 378.6 283 69.6
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 5.6e-103 378.3 287 70.0
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 9.5e-103 377.5 217 84.3
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.2e-102 377.1 276 71.4
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.6e-102 376.7 269 71.7
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 2.8e-102 375.9 304 67.4
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.6e-102 375.6 221 82.4
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 3.6e-102 375.6 268 70.9
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.8e-101 373.2 278 70.9
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 6.8e-101 371.3 275 71.6
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.6e-100 369.4 295 67.1
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.6e-100 369.4 274 69.3
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 3.4e-100 369.0 223 83.0
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 4.4e-100 368.6 223 81.6
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 5.8e-100 368.2 283 67.5
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.3e-99 367.1 221 81.9
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.9e-99 365.9 280 68.2
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.9e-99 365.9 284 68.7
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 4.9e-99 365.2 294 65.6
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 4.9e-99 365.2 274 68.6
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 6.4e-99 364.8 223 79.8
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 6.4e-99 364.8 273 68.5
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-98 363.6 284 66.5
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.4e-98 363.6 278 67.6
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.4e-98 362.8 246 74.8
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 2.4e-98 362.8 275 68.0
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 2.4e-98 362.8 283 66.8
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.6e-97 360.1 278 65.8
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.6e-97 360.1 223 79.8
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.1e-97 359.8 278 66.9
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 3.5e-97 359.0 221 80.5
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 4.6e-97 358.6 279 66.7
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 4.6e-97 358.6 283 69.3
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 4.6e-97 358.6 221 81.9
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 7.8e-97 357.8 278 65.8
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.0e-96 357.5 289 65.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 5.1e-96 355.1 309 62.1
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 5.1e-96 355.1 280 66.4
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 8.6e-96 354.4 279 66.3
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 2.5e-95 352.8 221 76.9
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 3.3e-95 352.4 280 65.7
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 1.2e-94 350.5 249 72.7
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.1e-94 349.7 275 66.9
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 4.7e-94 348.6 291 64.6
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 4.7e-94 348.6 221 77.8
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 8.1e-94 347.8 278 64.7
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.8e-93 346.7 223 75.3
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.4e-93 346.3 221 76.5
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.1e-93 345.9 223 75.8
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 3.1e-93 345.9 291 62.2
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 5.2e-93 345.1 221 78.7
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 8.9e-93 344.4 236 73.7
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 2.2e-91 339.7 280 65.4
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 3.8e-91 339.0 222 76.6
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.9e-90 336.7 221 73.8
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 7.1e-90 334.7 198 84.3
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.9e-87 326.6 221 72.9
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 2.5e-87 326.2 221 73.8
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.3e-86 323.9 221 75.1
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.1e-86 323.2 222 75.7
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 3.6e-86 322.4 223 72.6
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 9.0e-85 317.8 211 74.4
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 9.0e-85 317.8 196 78.6
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 3.4e-84 315.8 299 59.5
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-82 310.5 279 60.6
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 1.2e-81 307.4 217 73.7
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 2.1e-81 306.6 197 74.1
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 6.7e-80 301.6 257 63.4
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 5.6e-79 298.5 189 77.2
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 2.4e-77 293.1 170 83.5
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 2.4e-77 293.1 233 65.2
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 4.0e-77 292.4 189 77.2
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 8.4e-75 284.6 221 66.5
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 8.4e-75 284.6 170 81.8
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 4.6e-73 278.9 296 54.4
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.8e-70 268.9 223 63.7
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.6e-62 243.8 217 58.1
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 3.1e-61 239.6 221 59.3
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.8e-56 223.8 209 50.7
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 2.2e-54 216.9 199 56.8
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.4e-53 214.2 201 50.7
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.4e-53 214.2 202 50.0
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 4.5e-52 209.1 222 53.2
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.0e-47 193.7 167 55.7
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 5.3e-37 159.1 163 54.6
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.2e-34 149.8 91 78.0
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 5.2e-32 142.5 126 61.9
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 5.5e-26 122.5 96 65.6
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 1.0e-24 118.2 150 48.7
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 3.4e-23 113.2 73 79.5
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.5e-23 112.1 170 39.4
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.8e-22 110.2 78 69.2
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.1e-21 108.2 150 45.3
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 8.6e-19 98.6 74 71.6
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-18 97.8 72 62.5
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 4.2e-18 96.3 150 42.0
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 9.5e-18 95.1 59 76.3
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 8.0e-17 92.0 178 37.6
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 8.0e-17 92.0 200 35.0
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.8e-16 90.9 50 84.0
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 3.0e-16 90.1 57 73.7
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 4.0e-16 89.7 200 35.5
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 6.8e-16 89.0 55 74.5
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 6.8e-16 89.0 55 74.5
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.2e-15 88.2 130 42.3
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.2e-15 88.2 51 76.5
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 2.0e-15 87.4 218 31.2
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 3.7e-14 83.2 110 44.5
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 8.3e-14 82.0 102 47.1
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 5.4e-13 79.3 89 49.4
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.8e-12 75.5 59 55.9
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 6.6e-11 72.4 56 64.3
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.9e-10 70.9 93 45.2
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 3.3e-10 70.1 193 25.9
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.0e-08 65.1 184 22.8
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 1.5e-07 61.2 168 24.4
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.5e-07 61.2 169 25.4
EL10Ac1g01937 Beta vulgaris HOM05D005250 ORTHO05D006342 2.0e-07 60.8 59 57.6
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 4.4e-07 59.7 196 26.0
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 4.4e-07 59.7 205 24.9
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 9.8e-07 58.5 168 24.4
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 3.7e-06 56.6 169 24.9
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 3.7e-06 56.6 201 24.9
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 4.9e-06 56.2 201 23.4
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 8.3e-06 55.5 172 23.3


User provided reference genes

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