Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.8e-206 721.8 398 100.0
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 5.8e-188 661.0 405 91.6
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 4.3e-175 618.2 388 88.4
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.3e-174 616.7 388 88.1
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 2.5e-151 539.3 388 76.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 3.9e-136 488.8 401 70.8
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 5.5e-130 468.4 400 71.0
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.8e-120 436.8 416 65.1
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 3.3e-114 416.0 414 59.9
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 4.0e-112 409.1 418 62.7
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.0e-108 396.7 411 63.3
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 7.8e-108 394.8 421 58.2
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.5e-106 390.6 415 58.3
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.9e-106 390.2 438 56.4
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 3.6e-105 386.0 402 61.2
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 8.0e-105 384.8 425 56.5
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 8.0e-105 384.8 425 56.5
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.2e-100 370.9 411 55.5
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.0e-100 370.2 411 54.5
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.7e-100 369.8 423 54.1
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.3e-99 367.5 421 58.4
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.5e-98 363.2 412 55.8
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 2.1e-97 360.1 396 56.8
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.8e-96 357.1 409 57.0
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 8.3e-94 348.2 425 52.9
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-93 347.8 395 59.0
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 7.1e-93 345.1 405 57.5
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.2e-92 344.4 422 55.2
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-92 344.0 421 54.9
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 4.6e-92 342.4 436 50.7
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 4.6e-92 342.4 404 55.0
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.0e-91 341.3 423 54.8
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 5.6e-90 335.5 413 55.4
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 4.4e-87 325.9 428 50.2
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 1.3e-83 314.3 436 50.9
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.1e-82 311.2 432 51.2
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 9.6e-82 308.1 440 50.2
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 9.6e-82 308.1 440 50.7
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 9.6e-82 308.1 440 50.2
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.2e-81 307.8 410 49.3
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.6e-81 307.4 434 47.0
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 1.6e-81 307.4 410 50.7
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.1e-81 307.0 439 49.7
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.4e-80 303.5 391 50.1
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 8.9e-80 301.6 418 50.2
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.5e-79 300.8 345 53.6
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.9e-78 296.6 377 54.9
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.2e-76 291.2 384 48.2
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 3.9e-75 286.2 428 44.9
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 3.3e-74 283.1 454 48.0
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.3e-73 281.2 451 48.8
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 4.0e-72 276.2 316 53.8
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 9.9e-71 271.6 429 44.3
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.9e-71 271.6 420 51.4
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 9.9e-71 271.6 420 51.4
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.4e-69 266.9 420 52.9
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 7.1e-69 265.4 420 48.3
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.6e-68 264.2 409 48.9
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 2.1e-68 263.8 406 45.8
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 2.5e-66 256.9 249 58.2
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.5e-66 256.9 402 43.5
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 5.6e-66 255.8 404 49.0
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.8e-64 250.8 414 42.3
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.9e-64 248.8 396 43.9
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.9e-64 248.8 396 43.9
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.9e-64 248.8 396 43.9
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.0e-63 247.3 415 42.4
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 9.9e-63 245.0 403 46.7
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.6e-60 236.1 390 42.8
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 8.7e-59 231.9 401 39.9
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 7.4e-58 228.8 399 40.6
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.3e-57 228.0 390 41.0
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.3e-57 228.0 390 41.0
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 6.2e-57 225.7 409 46.2
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 6.9e-56 222.2 254 55.5
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.2e-55 221.5 385 41.6
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 4.5e-55 219.5 407 42.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.9e-54 216.9 403 43.9
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.9e-54 216.1 395 40.5
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 6.5e-54 215.7 403 44.2
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 7.9e-52 208.8 404 39.1
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.8e-51 207.6 415 43.9
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.8e-51 207.6 482 40.7
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 8.7e-51 205.3 389 42.9
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.5e-50 203.8 429 38.7
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 3.3e-50 203.4 409 44.3
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 9.6e-50 201.8 493 39.4
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.3e-49 201.4 384 41.7
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 2.1e-49 200.7 384 38.8
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 6.3e-49 199.1 394 43.7
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.1e-48 198.4 384 41.4
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 6.5e-46 189.1 395 44.6
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 2.7e-44 183.7 394 43.7
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 2.7e-44 183.7 394 43.7
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 4.6e-44 183.0 413 41.4
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.3e-43 181.4 490 37.6
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 3.0e-43 180.3 403 39.0
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.9e-42 177.6 432 35.6
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 3.4e-39 166.8 381 37.5
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.0e-38 165.2 390 39.7
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 8.5e-38 162.2 393 35.1
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.5e-37 160.6 415 35.7
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 1.4e-35 154.8 448 35.0
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 7.4e-34 149.1 415 34.5
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 9.7e-34 148.7 435 34.7
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 3.7e-33 146.7 383 37.6
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 4.8e-33 146.4 482 34.4
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 2.4e-32 144.1 454 35.2
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.5e-31 141.4 420 32.6
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.5e-31 141.4 268 44.4
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 3.4e-31 140.2 393 36.1
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 4.5e-31 139.8 402 36.8
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 7.7e-31 139.0 408 33.6
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 7.7e-31 139.0 391 34.0
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.0e-30 138.7 397 36.0
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.0e-30 138.7 397 36.0
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.3e-30 138.3 406 33.7
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 1.3e-30 138.3 406 33.7
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-29 134.4 440 32.0
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 3.2e-29 133.7 446 33.6
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 3.2e-29 133.7 445 31.9
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 4.2e-29 133.3 447 33.8
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.2e-28 131.7 306 34.6
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.2e-28 131.7 486 32.5
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 6.1e-28 129.4 432 32.6
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 6.1e-28 129.4 119 61.3
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 6.7e-27 125.9 488 34.4
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 8.8e-27 125.6 401 34.2
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.5e-26 124.8 227 42.3
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.5e-26 124.8 431 34.8
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 3.3e-26 123.6 401 33.9
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 3.3e-26 123.6 192 40.6
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 5.7e-26 122.9 383 28.7
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 7.4e-26 122.5 461 30.6
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-25 121.3 410 33.7
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 6.3e-25 119.4 411 31.4
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.8e-24 117.9 452 34.7
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 7.0e-24 115.9 319 33.2
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 2.5e-21 107.5 454 33.5
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 9.4e-21 105.5 328 32.6
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-20 104.8 465 30.8
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 3.6e-20 103.6 376 31.4
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 4.7e-20 103.2 399 34.3
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.2e-19 99.8 387 28.4
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 5.7e-18 96.3 191 38.2
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 7.5e-18 95.9 242 35.1
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.1e-16 90.5 112 63.4
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.5e-13 81.6 412 26.9
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 1.9e-13 81.3 73 57.5
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.5e-13 79.7 149 38.9
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 2.6e-10 70.9 198 30.3
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 4.4e-10 70.1 76 56.6
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 2.9e-06 57.4 153 31.4
BcaC04g21425 Brassica carinata HOM05D004568 ORTHO05D005343 3.8e-06 57.0 163 30.7
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 5.0e-06 56.6 142 33.1


User provided reference genes

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