Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G129101 Populus trichocarpa HOM05D001474 ORTHO05D024745 1.4e-65 252.7 119 100.0
Sabra10G0098200 Salix brachista HOM05D001474 ORTHO05D024745 1.4e-25 119.8 100 65.0
Potri.008G117200 Populus trichocarpa HOM05D001474 ORTHO05D001461 1.4e-12 76.6 49 79.6
Sabra08G0089000 Salix brachista HOM05D001474 ORTHO05D002562 1.8e-12 76.3 49 77.6
QL01p045069 Quercus lobata HOM05D001474 ORTHO05D001461 3.8e-10 68.6 49 73.5
Solyc05g009780.3 Solanum lycopersicum HOM05D001474 ORTHO05D001461 8.5e-10 67.4 49 69.4
Thecc.02G360300 Theobroma cacao HOM05D001474 ORTHO05D001461 8.5e-10 67.4 49 71.4
PGSC0003DMG400000812 Solanum tuberosum HOM05D001474 ORTHO05D001461 1.1e-09 67.0 49 69.4
CSS0015398 Camellia sinensis var. sinensis HOM05D001474 ORTHO05D024745 1.9e-09 66.2 49 71.4
CSS0019822 Camellia sinensis var. sinensis HOM05D001474 ORTHO05D001461 1.9e-09 66.2 49 71.4
Duzib248G1055 Durio zibethinus HOM05D001474 ORTHO05D001461 2.5e-09 65.9 49 69.4
CiPaw.16G003300 Carya illinoinensis HOM05D001474 ORTHO05D001461 4.2e-09 65.1 49 71.4
Gohir.A12G169900 Gossypium hirsutum HOM05D001474 ORTHO05D001461 5.5e-09 64.7 49 69.4
Gohir.D12G173200 Gossypium hirsutum HOM05D001474 ORTHO05D001461 5.5e-09 64.7 49 69.4
Gorai.008G185700 Gossypium raimondii HOM05D001474 ORTHO05D001461 5.5e-09 64.7 49 69.4
Sopen05g005610 Solanum pennellii HOM05D001474 ORTHO05D001461 5.5e-09 64.7 49 67.3
CAN.G1982.5 Capsicum annuum HOM05D001474 ORTHO05D001461 9.4e-09 63.9 49 65.3
TWI31G0541 Tripterygium wilfordii HOM05D001474 ORTHO05D001461 1.6e-08 63.2 49 69.4
vmacro10532 Vaccinium macrocarpon HOM05D001474 ORTHO05D001461 1.6e-08 63.2 49 71.4
GSVIVG01011946001 Vitis vinifera HOM05D001474 ORTHO05D001461 1.6e-08 63.2 49 67.3
Nitab4.5_0008588g0020 Nicotiana tabacum HOM05D001474 ORTHO05D001461 2.1e-08 62.8 49 63.3
COL.COLO4_07875 Corchorus olitorius HOM05D001474 ORTHO05D001461 2.7e-08 62.4 49 65.3
Manes.14G098100 Manihot esculenta HOM05D001474 ORTHO05D001461 2.7e-08 62.4 49 67.3
Peaxi162Scf00380g00411 Petunia axillaris HOM05D001474 ORTHO05D001461 2.7e-08 62.4 49 65.3
Peaxi162Scf00380g00521 Petunia axillaris HOM05D001474 ORTHO05D001461 2.7e-08 62.4 49 65.3
Cfa018624 Carpinus fangiana HOM05D001474 ORTHO05D001461 3.6e-08 62.0 49 67.3
Haze_17446 Corylus avellana HOM05D001474 ORTHO05D001461 3.6e-08 62.0 49 67.3
MSTRG.2258 Avicennia marina HOM05D001474 ORTHO05D001461 4.7e-08 61.6 49 65.3
Phvul.003G111801 Phaseolus vulgaris HOM05D001474 ORTHO05D001461 4.7e-08 61.6 49 67.3
Lalb_Chr10g0099781 Lupinus albus HOM05D001474 ORTHO05D001461 6.1e-08 61.2 49 63.3
Ca_24153_v3 Cicer arietinum L. HOM05D001474 ORTHO05D001461 7.9e-08 60.8 49 67.3
Nitab4.5_0000672g0030 Nicotiana tabacum HOM05D001474 ORTHO05D001461 7.9e-08 60.8 49 61.2
Ciclev10031889m.g Citrus clementina HOM05D001474 ORTHO05D001461 1.0e-07 60.5 49 65.3
Cc11_g10550 Coffea canephora HOM05D001474 ORTHO05D001461 1.0e-07 60.5 49 63.3
Glyma.02G099300 Glycine max HOM05D001474 ORTHO05D001461 1.0e-07 60.5 49 67.3
VMungo1215G2675 Vigna mungo HOM05D001474 ORTHO05D001461 1.0e-07 60.5 49 65.3
TWI79G0952 Tripterygium wilfordii HOM05D001474 ORTHO05D001461 1.4e-07 60.1 49 65.3
Sc11g0003150 Simmondsia chinensis HOM05D001474 ORTHO05D001461 1.8e-07 59.7 49 63.3
Atru.chr11.1344 Acer truncatum HOM05D001474 ORTHO05D001461 2.3e-07 59.3 49 65.3
MBI09_g36360_MAGBIO Magnolia biondii HOM05D001474 ORTHO05D001461 2.3e-07 59.3 49 59.2
ECA234G1296 Erigeron canadensis HOM05D001474 ORTHO05D001461 3.0e-07 58.9 49 65.3
TAR374G1280 Trochodendron aralioides HOM05D001474 ORTHO05D001461 3.0e-07 58.9 49 65.3
unitig_62.g23716 Utricularia gibba HOM05D001474 ORTHO05D001461 3.0e-07 58.9 49 65.3
Lj2g0016827 Lotus japonicus HOM05D001474 ORTHO05D001461 3.9e-07 58.5 49 63.3
Nn3g17749 Nelumbo nucifera HOM05D001474 ORTHO05D001461 3.9e-07 58.5 49 63.3
Rhsim09G0111700 Rhododendron simsii HOM05D001474 ORTHO05D001461 3.9e-07 58.5 49 65.3
Actinidia16621 Actinidia chinensis HOM05D001474 ORTHO05D001461 5.1e-07 58.2 49 63.3
ATR0807G229 Amborella trichopoda HOM05D001474 ORTHO05D001461 5.1e-07 58.2 49 61.2
Eucgr.G02344 Eucalyptus grandis HOM05D001474 ORTHO05D001461 5.1e-07 58.2 49 63.3
arahy.Tifrunner.gnm1.ann1.46YC1P Arachis hypogaea HOM05D001474 ORTHO05D001461 6.7e-07 57.8 49 63.3
arahy.Tifrunner.gnm1.ann1.5V1RNQ Arachis hypogaea HOM05D001474 ORTHO05D001461 6.7e-07 57.8 49 63.3
Dinv21127 Davidia involucrata HOM05D001474 ORTHO05D001461 6.7e-07 57.8 49 63.3
Hund05764 Selenicereus undatus HOM05D001474 ORTHO05D001461 6.7e-07 57.8 49 59.2
CANSAT64G2560 Cannabis sativa HOM05D001474 ORTHO05D001461 1.5e-06 56.6 49 63.3
Migut.E00307 Erythranthe guttata HOM05D001474 ORTHO05D001461 1.5e-06 56.6 49 59.2
CsaV3_2G012570 Cucumis sativus L. HOM05D001474 ORTHO05D001461 2.0e-06 56.2 49 61.2
HPP92_010201 Vanilla planifolia HOM05D001474 ORTHO05D001461 2.0e-06 56.2 49 59.2
AUR62002919 Chenopodium quinoa HOM05D001474 ORTHO05D001461 2.6e-06 55.8 49 65.3
ClCG03G009840 Citrullus lanatus HOM05D001474 ORTHO05D001461 2.6e-06 55.8 49 59.2
FAN07G0317 Fragaria x ananassa HOM05D001474 ORTHO05D001461 4.4e-06 55.1 49 59.2
FAN17G2287 Fragaria x ananassa HOM05D001474 ORTHO05D001461 4.4e-06 55.1 49 59.2
Lsat_1_v5_gn_4_19920 Lactuca sativa HOM05D001474 ORTHO05D001461 4.4e-06 55.1 49 61.2
MD13G1046000 Malus domestica HOM05D001474 ORTHO05D001461 4.4e-06 55.1 49 61.2
Psat2g085800 Pisum sativum HOM05D001474 ORTHO05D001461 4.4e-06 55.1 49 61.2
TPR.G25946 Trifolium pratense HOM05D001474 ORTHO05D001461 4.4e-06 55.1 49 65.3
Zm00001eb071170 Zea mays HOM05D001474 ORTHO05D001461 4.4e-06 55.1 49 57.1
AUR62035278 Chenopodium quinoa HOM05D001474 ORTHO05D001461 5.7e-06 54.7 49 63.3
Glyma.01G087100 Glycine max HOM05D001474 ORTHO05D024745 5.7e-06 54.7 49 61.2
DCAR_030077 Daucus carota HOM05D001474 ORTHO05D001461 7.4e-06 54.3 49 63.3
RcHm_v2.0_Chr4g0435761 Rosa chinensis HOM05D001474 ORTHO05D001461 7.4e-06 54.3 49 57.1
BcaC06g33960 Brassica carinata HOM05D001474 ORTHO05D001461 9.7e-06 53.9 49 61.2
C07p34620 Brassica napus HOM05D001474 ORTHO05D001461 9.7e-06 53.9 49 61.2
PGR119G0921 Punica granatum HOM05D001474 ORTHO05D001461 9.7e-06 53.9 49 59.2
SalBow8G2205 Salvia bowleyana HOM05D001474 ORTHO05D001461 9.7e-06 53.9 49 51.0


User provided reference genes

Program Settings