Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G124100 Populus trichocarpa HOM05D000325 ORTHO05D034071 2.4e-60 235.3 123 100.0
Sabra08G0092000 Salix brachista HOM05D000325 ORTHO05D000583 7.6e-22 107.5 287 33.4
Potri.008G121300 Populus trichocarpa HOM05D000325 ORTHO05D000583 2.3e-18 95.9 273 31.5
Sabra10G0094100 Salix brachista HOM05D000325 ORTHO05D034071 2.9e-13 79.0 105 49.5
Cfa018589 Carpinus fangiana HOM05D000325 ORTHO05D000583 1.6e-11 73.2 286 28.7
CiPaw.15G086000 Carya illinoinensis HOM05D000325 ORTHO05D000583 6.1e-11 71.2 39 89.7
FAN07G0478 Fragaria x ananassa HOM05D000325 ORTHO05D000583 6.1e-11 71.2 39 89.7
FAN17G2414 Fragaria x ananassa HOM05D000325 ORTHO05D000583 6.1e-11 71.2 39 89.7
FAN18G3564 Fragaria x ananassa HOM05D000325 ORTHO05D000583 6.1e-11 71.2 39 89.7
MD13G1040800 Malus domestica HOM05D000325 ORTHO05D000583 6.1e-11 71.2 39 89.7
MD16G1042100 Malus domestica HOM05D000325 ORTHO05D000583 6.1e-11 71.2 39 89.7
RcHm_v2.0_Chr4g0435061 Rosa chinensis HOM05D000325 ORTHO05D000583 6.1e-11 71.2 39 89.7
Nitab4.5_0000057g0240 Nicotiana tabacum HOM05D000325 ORTHO05D000583 1.0e-10 70.5 39 84.6
Nitab4.5_0006229g0020 Nicotiana tabacum HOM05D000325 ORTHO05D000583 1.0e-10 70.5 39 84.6
Actinidia14897 Actinidia chinensis HOM05D000286 ORTHO05D000583 1.4e-10 70.1 39 87.2
FAN22G0247 Fragaria x ananassa HOM05D000325 ORTHO05D000583 1.4e-10 70.1 39 87.2
Hma1.2p1_0061F.1_g033820 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 1.4e-10 70.1 39 87.2
CANSAT01G2262 Cannabis sativa HOM05D000325 ORTHO05D000583 1.8e-10 69.7 39 87.2
GSVIVG01011889001 Vitis vinifera HOM05D000325 ORTHO05D000583 1.8e-10 69.7 39 87.2
CSS0011429 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 84.6
CSS0026499 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 84.6
DCAR_030159 Daucus carota HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 84.6
FvH4_4g27290 Fragaria vesca HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 87.2
FAN12G2111 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 87.2
FAN12G2991 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 87.2
Gohir.A03G147400 Gossypium hirsutum HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 87.2
Gohir.D02G170600 Gossypium hirsutum HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 87.2
Gorai.005G191700 Gossypium raimondii HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 87.2
Manes.14G103100 Manihot esculenta HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 87.2
Peaxi162Scf00951g00018 Petunia axillaris HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 82.1
Prupe.1G312000 Prunus persica HOM05D000325 ORTHO05D000583 2.3e-10 69.3 39 87.2
Haze_17491 Corylus avellana HOM05D000325 ORTHO05D000583 3.0e-10 68.9 286 27.6
Solyc04g007230.3 Solanum lycopersicum HOM05D000325 ORTHO05D000583 3.0e-10 68.9 39 82.1
Sopen04g002290 Solanum pennellii HOM05D000325 ORTHO05D000583 3.0e-10 68.9 39 82.1
CSS0026615 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 3.9e-10 68.6 39 82.1
Lj5g0023833 Lotus japonicus HOM05D000325 ORTHO05D000583 3.9e-10 68.6 39 82.1
Thecc.02G228600 Theobroma cacao HOM05D000325 ORTHO05D000583 5.1e-10 68.2 64 59.4
arahy.Tifrunner.gnm1.ann1.029DEV Arachis hypogaea HOM05D000325 ORTHO05D000583 6.7e-10 67.8 39 82.1
arahy.Tifrunner.gnm1.ann1.PM3ZEV Arachis hypogaea HOM05D000325 ORTHO05D000583 6.7e-10 67.8 39 82.1
CsaV3_5G023080 Cucumis sativus L. HOM05D000325 ORTHO05D000583 6.7e-10 67.8 39 84.6
Dinv21079 Davidia involucrata HOM05D000286 ORTHO05D000583 6.7e-10 67.8 39 84.6
HanXRQChr08g0213531 Helianthus annuus HOM05D000325 ORTHO05D000583 6.7e-10 67.8 65 58.5
Lsat_1_v5_gn_8_41260 Lactuca sativa HOM05D000325 ORTHO05D000583 6.7e-10 67.8 65 58.5
Lj6A757T33 Lonicera japonica HOM05D000325 ORTHO05D000583 6.7e-10 67.8 39 84.6
Medtr1g110690 Medicago truncatula HOM05D000325 ORTHO05D000583 6.7e-10 67.8 39 82.1
TPR.G18825 Trifolium pratense HOM05D000325 ORTHO05D000583 6.7e-10 67.8 39 82.1
Cc11_g10060 Coffea canephora HOM05D000325 ORTHO05D000583 8.8e-10 67.4 39 82.1
Psat6g227840 Pisum sativum HOM05D000325 ORTHO05D000583 8.8e-10 67.4 38 84.2
Sc04g0006350 Simmondsia chinensis HOM05D000325 ORTHO05D000583 8.8e-10 67.4 39 79.5
ECA233G4360 Erigeron canadensis HOM05D000286 ORTHO05D000170 1.1e-09 67.0 65 55.4
CARHR026070 Cardamine hirsuta HOM05D000325 ORTHO05D000583 1.5e-09 66.6 39 82.1
Cpa.g.sc1.33 Carica papaya HOM05D000325 ORTHO05D000583 1.5e-09 66.6 65 58.5
Lalb_Chr02g0145921 Lupinus albus HOM05D000325 ORTHO05D000583 1.5e-09 66.6 39 82.1
Phvul.007G027900 Phaseolus vulgaris HOM05D000325 ORTHO05D000583 1.5e-09 66.6 39 82.1
THA.LOC104821929 Tarenaya hassleriana HOM05D000325 ORTHO05D000583 1.5e-09 66.6 39 82.1
VMungo0720G0298 Vigna mungo HOM05D000325 ORTHO05D000583 1.5e-09 66.6 39 82.1
ClCG03G009630 Citrullus lanatus HOM05D000325 ORTHO05D000583 2.0e-09 66.2 39 82.1
SalBow8G1572 Salvia bowleyana HOM05D000325 ORTHO05D000583 2.0e-09 66.2 65 56.9
SalBow8G2708 Salvia bowleyana HOM05D000325 ORTHO05D000583 2.0e-09 66.2 65 56.9
SGA_v2.0_scaffold36G14540 Striga asiatica HOM05D000325 ORTHO05D000583 2.0e-09 66.2 39 82.1
unitig_8.g3439 Utricularia gibba HOM05D000325 ORTHO05D000583 2.0e-09 66.2 39 82.1
vmacro10562 Vaccinium macrocarpon HOM05D000325 ORTHO05D000583 2.0e-09 66.2 39 84.6
Aa31LG7G9080 Aethionema arabicum HOM05D000325 ORTHO05D000583 2.6e-09 65.9 64 57.8
AL1G39910 Arabidopsis lyrata HOM05D000325 ORTHO05D000583 2.6e-09 65.9 64 57.8
MSTRG.7663 Avicennia marina HOM05D000325 ORTHO05D000583 2.6e-09 65.9 65 55.4
BcaB03g14041 Brassica carinata HOM05D000325 ORTHO05D000583 2.6e-09 65.9 64 57.8
A07p12590 Brassica napus HOM05D000325 ORTHO05D000583 2.6e-09 65.9 64 57.8
BraA07t29037Z Brassica rapa HOM05D000325 ORTHO05D000583 2.6e-09 65.9 64 57.8
Carub.0001s2508 Capsella rubella HOM05D000325 ORTHO05D000583 2.6e-09 65.9 64 57.8
Thhalv10008210m.g Eutrema salsugineum HOM05D000325 ORTHO05D000583 2.6e-09 65.9 64 57.8
Sp1g22800 Schrenkiella parvula HOM05D000325 ORTHO05D000583 2.6e-09 65.9 64 57.8
Sed0026334 Sechium edule HOM05D000325 ORTHO05D000583 2.6e-09 65.9 39 82.1
arahy.Tifrunner.gnm1.ann1.J14PJ1 Arachis hypogaea HOM05D000325 ORTHO05D000583 4.4e-09 65.1 39 76.9
AT1G25420 Arabidopsis thaliana HOM05D000325 ORTHO05D000583 5.7e-09 64.7 39 79.5
CAN.G1292.1 Capsicum annuum HOM05D000325 ORTHO05D000583 5.7e-09 64.7 39 79.5
Glyma.10G273700 Glycine max HOM05D000325 ORTHO05D000583 5.7e-09 64.7 39 79.5
Glyma.20G116300 Glycine max HOM05D000325 ORTHO05D000583 5.7e-09 64.7 39 79.5
EL10Ac6g14390 Beta vulgaris HOM05D000325 ORTHO05D000583 7.4e-09 64.3 64 56.2
BcaC06g35206 Brassica carinata HOM05D000325 ORTHO05D000583 7.4e-09 64.3 64 56.2
C07p18680 Brassica napus HOM05D000325 ORTHO05D000583 7.4e-09 64.3 64 56.2
BolC7t42379H Brassica oleracea HOM05D000325 ORTHO05D000583 7.4e-09 64.3 64 56.2
CDE06G1442 Ceratophyllum demersum HOM05D000325 ORTHO05D000583 7.4e-09 64.3 39 82.1
AUR62002859 Chenopodium quinoa HOM05D000325 ORTHO05D000583 7.4e-09 64.3 64 56.2
Ciclev10015906m.g Citrus clementina HOM05D000325 ORTHO05D000583 7.4e-09 64.3 286 26.2
TAR374G1005 Trochodendron aralioides HOM05D000325 ORTHO05D000583 7.4e-09 64.3 39 82.1
PGR119G0378 Punica granatum HOM05D000325 ORTHO05D000583 1.7e-08 63.2 39 82.1
SEGI_21337 Sequoiadendron giganteum HOM05D000325 ORTHO05D000583 1.7e-08 63.2 62 58.1
Migut.L01060 Erythranthe guttata HOM05D000325 ORTHO05D000583 2.2e-08 62.8 39 79.5
Atru.chr11.98 Acer truncatum HOM05D000325 ORTHO05D000583 6.3e-08 61.2 288 27.4
ATR1125G079 Amborella trichopoda HOM05D000325 ORTHO05D000583 6.3e-08 61.2 39 76.9
Eucgr.G02315 Eucalyptus grandis HOM05D000325 ORTHO05D000583 6.3e-08 61.2 39 79.5
Aqoxy3G00284 Aquilegia oxysepala HOM05D000325 ORTHO05D000583 1.1e-07 60.5 39 76.9
SEGI_36265 Sequoiadendron giganteum HOM05D000325 ORTHO05D000583 1.8e-07 59.7 62 54.8
AUR62035209 Chenopodium quinoa HOM05D000325 ORTHO05D000583 4.1e-07 58.5 64 54.7
Os01g0687700 Oryza sativa ssp. japonica HOM05D000325 ORTHO05D000583 5.3e-07 58.2 39 69.2
PSO782G4195 Papaver somniferum HOM05D000325 ORTHO05D000583 5.3e-07 58.2 39 69.2
Zm00001eb156360 Zea mays HOM05D000325 ORTHO05D000583 5.3e-07 58.2 39 69.2
Mapoly0105s0005 Marchantia polymorpha HOM05D000325 ORTHO05D000583 7.0e-07 57.8 39 71.8
arahy.Tifrunner.gnm1.ann1.DJKK7L Arachis hypogaea HOM05D000325 ORTHO05D000583 9.1e-07 57.4 39 64.1
Pp3c14_9750 Physcomitrium patens HOM05D000325 ORTHO05D000583 1.5e-06 56.6 62 54.8
ATR0564G174 Amborella trichopoda HOM05D000325 ORTHO05D000583 2.6e-06 55.8 62 50.0
Pp3c2_13590 Physcomitrium patens HOM05D000325 ORTHO05D000583 4.5e-06 55.1 65 47.7
SMO364G0725 Selaginella moellendorffii HOM05D000325 ORTHO05D000583 4.5e-06 55.1 62 51.6
PSO210G5173 Papaver somniferum HOM05D000325 ORTHO05D000583 5.9e-06 54.7 62 53.2
PSO447G0148 Papaver somniferum HOM05D000325 ORTHO05D000583 5.9e-06 54.7 62 53.2
TWI75G1137 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 5.9e-06 54.7 39 69.2
Nn1g05203 Nelumbo nucifera HOM05D000325 ORTHO05D000583 7.7e-06 54.3 39 66.7
HPP92_003777 Vanilla planifolia HOM05D000325 ORTHO05D000583 7.7e-06 54.3 54 53.7


User provided reference genes

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