Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G121400 Populus trichocarpa HOM05D000260 ORTHO05D010362 1.5e-115 419.5 199 100.0
Potri.010G121350 Populus trichocarpa HOM05D000072 ORTHO05D000026 1.1e-75 287.0 240 62.9
Potri.010G121100 Populus trichocarpa HOM05D000260 ORTHO05D000318 5.0e-71 271.6 239 60.3
Potri.010G121025 Populus trichocarpa HOM05D008908 ORTHO05D010362 5.9e-56 221.5 205 58.0
Manes.06G065500 Manihot esculenta HOM05D000260 ORTHO05D000318 2.8e-29 132.9 243 34.6
QL01p040233 Quercus lobata HOM05D000260 ORTHO05D000318 1.3e-18 97.4 257 32.3
Ciclev10014868m.g Citrus clementina HOM05D000072 ORTHO05D000026 1.1e-17 94.4 221 30.8
QL01p002259 Quercus lobata HOM05D000072 ORTHO05D000026 4.1e-17 92.4 227 32.6
Thecc.02G224000 Theobroma cacao HOM05D016466 ORTHO05D010362 7.0e-17 91.7 260 29.2
Ciclev10014231m.g Citrus clementina HOM05D000072 ORTHO05D000026 2.0e-16 90.1 217 28.6
Ciclev10014492m.g Citrus clementina HOM05D000260 ORTHO05D000318 4.6e-16 89.0 238 28.2
Ciclev10014945m.g Citrus clementina HOM05D000072 ORTHO05D000026 1.0e-15 87.8 227 29.5
Thecc.02G223900 Theobroma cacao HOM05D016466 ORTHO05D010362 1.3e-15 87.4 251 27.5
FvH4_4g26940 Fragaria vesca HOM05D000072 ORTHO05D000026 3.9e-15 85.9 247 29.1
QL01p040218 Quercus lobata HOM05D000260 ORTHO05D000318 1.9e-14 83.6 249 28.5
QL05p056320 Quercus lobata HOM05D000072 ORTHO05D000026 3.3e-14 82.8 224 28.1
FAN12G0686 Fragaria x ananassa HOM05D000260 ORTHO05D000318 2.8e-13 79.7 244 30.7
Dinv16122 Davidia involucrata HOM05D000260 ORTHO05D010362 3.6e-13 79.3 228 29.8
FAN17G3025 Fragaria x ananassa HOM05D000072 ORTHO05D000026 6.2e-13 78.6 235 28.1
FAN12G0680 Fragaria x ananassa HOM05D000260 ORTHO05D000318 8.0e-13 78.2 244 30.3
FAN22G0230 Fragaria x ananassa HOM05D000260 ORTHO05D000318 8.0e-13 78.2 244 30.3
Ciclev10016350m.g Citrus clementina HOM05D008908 ORTHO05D010362 1.1e-12 77.8 194 29.4
FAN17G2038 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.1e-12 77.8 246 29.7
Aa31LG7G9100 Aethionema arabicum HOM05D000260 ORTHO05D000318 1.4e-12 77.4 236 28.4
FAN12G2395 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.4e-12 77.4 230 29.1
FvH4_4g26841 Fragaria vesca HOM05D000260 ORTHO05D000318 1.8e-12 77.0 243 30.0
FvH4_4g26892 Fragaria vesca HOM05D000072 ORTHO05D000026 6.8e-12 75.1 230 27.0
vmacro21019 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 5.8e-11 72.0 228 24.6
QL05p056844 Quercus lobata HOM05D000260 ORTHO05D010362 7.5e-11 71.6 158 32.9
QL05p057061 Quercus lobata HOM05D046585 ORTHO05D026090 1.3e-10 70.9 200 32.5
Atru.chr11.210 Acer truncatum HOM05D000260 ORTHO05D000318 2.2e-10 70.1 241 26.1
CANSAT01G0046 Cannabis sativa HOM05D000260 ORTHO05D000318 6.4e-10 68.6 104 40.4
C05p25120 Brassica napus HOM05D000260 ORTHO05D000318 1.4e-09 67.4 230 27.4
Nitab4.5_0000694g0050 Nicotiana tabacum HOM05D000260 ORTHO05D000318 1.4e-09 67.4 202 27.7
Sp1g22830 Schrenkiella parvula HOM05D000260 ORTHO05D000318 3.2e-09 66.2 245 24.9
BcaC05g26468 Brassica carinata HOM05D000260 ORTHO05D000318 5.4e-09 65.5 230 27.0
Carub.0001s2511 Capsella rubella HOM05D000031 ORTHO05D000030 5.4e-09 65.5 239 26.4
BolC5t31244H Brassica oleracea HOM05D000260 ORTHO05D000318 7.0e-09 65.1 230 27.0
Atru.chr11.207 Acer truncatum HOM05D000260 ORTHO05D000318 2.0e-08 63.5 118 39.0
C05p25060 Brassica napus HOM05D000072 ORTHO05D000026 2.0e-08 63.5 223 26.9
Dinv31610 Davidia involucrata HOM05D000260 ORTHO05D010362 2.0e-08 63.5 87 41.4
Sc22g0001220 Simmondsia chinensis HOM05D000260 ORTHO05D000318 2.0e-08 63.5 198 29.8
BcaC06g35216 Brassica carinata HOM05D000260 ORTHO05D000318 2.7e-08 63.2 208 25.5
C07p18570 Brassica napus HOM05D000260 ORTHO05D000318 2.7e-08 63.2 208 25.5
BolC7t42368H Brassica oleracea HOM05D000260 ORTHO05D000318 2.7e-08 63.2 208 25.5
MD13G1036700 Malus domestica HOM05D000072 ORTHO05D000026 2.7e-08 63.2 225 26.2
GSVIVG01011850001 Vitis vinifera HOM05D000260 ORTHO05D000318 2.7e-08 63.2 87 42.5
HanXRQChr15g0477501 Helianthus annuus HOM05D000072 ORTHO05D000026 3.5e-08 62.8 104 35.6
MD16G1038000 Malus domestica HOM05D000072 ORTHO05D000026 4.6e-08 62.4 95 41.1
Manes.14G105800 Manihot esculenta HOM05D000260 ORTHO05D000318 4.6e-08 62.4 82 46.3
RcHm_v2.0_Chr4g0434531 Rosa chinensis HOM05D000260 ORTHO05D000318 6.0e-08 62.0 206 25.2
Atru.chr11.195 Acer truncatum HOM05D008908 ORTHO05D010362 7.8e-08 61.6 226 25.7
Lj3A880G112 Lonicera japonica HOM05D000260 ORTHO05D010362 1.0e-07 61.2 215 27.4
CSS0042166 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 2.3e-07 60.1 106 37.7
Sabra10G0091100 Salix brachista HOM05D000260 ORTHO05D000318 2.3e-07 60.1 96 36.5
C05p25080 Brassica napus HOM05D000072 ORTHO05D000026 3.0e-07 59.7 221 25.3
AL1G39930 Arabidopsis lyrata HOM05D000260 ORTHO05D000318 3.9e-07 59.3 239 26.4
BraA07t29035Z Brassica rapa HOM05D000260 ORTHO05D000318 3.9e-07 59.3 242 24.4
Hund25041 Selenicereus undatus HOM05D000260 ORTHO05D000318 3.9e-07 59.3 207 27.5
Haze_00644 Corylus avellana HOM05D000260 ORTHO05D000318 5.0e-07 58.9 84 41.7
HanXRQChr15g0477481 Helianthus annuus HOM05D000260 ORTHO05D000318 6.6e-07 58.5 119 31.9
FvH4_4g26840 Fragaria vesca HOM05D000260 ORTHO05D000318 8.6e-07 58.2 94 34.0
FAN12G1998 Fragaria x ananassa HOM05D000072 ORTHO05D000026 8.6e-07 58.2 94 34.0
Lalb_Chr21g0308771 Lupinus albus HOM05D000072 ORTHO05D000026 8.6e-07 58.2 187 24.1
vmacro10588 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 8.6e-07 58.2 261 24.9
Atru.chr11.208 Acer truncatum HOM05D008908 ORTHO05D010362 1.1e-06 57.8 207 26.1
CiPaw.06G017800 Carya illinoinensis HOM05D000072 ORTHO05D000026 1.1e-06 57.8 84 42.9
Manes.14G105900 Manihot esculenta HOM05D000260 ORTHO05D000318 1.1e-06 57.8 52 57.7
Aqoxy3G00215 Aquilegia oxysepala HOM05D000260 ORTHO05D000318 1.5e-06 57.4 73 38.4
A07p12570 Brassica napus HOM05D000260 ORTHO05D000318 1.5e-06 57.4 242 24.0
Thhalv10007057m.g Eutrema salsugineum HOM05D000260 ORTHO05D000318 1.5e-06 57.4 247 24.3
PGSC0003DMG400012083 Solanum tuberosum HOM05D000072 ORTHO05D000026 1.5e-06 57.4 73 35.6
BraA09t39428Z Brassica rapa HOM05D000072 ORTHO05D000026 1.9e-06 57.0 210 24.8
Carub.0001s2512 Capsella rubella HOM05D000260 ORTHO05D000318 1.9e-06 57.0 232 25.0
BraA09t39426Z Brassica rapa HOM05D000260 ORTHO05D000318 2.5e-06 56.6 225 23.6
FAN07G0021 Fragaria x ananassa HOM05D000260 ORTHO05D000318 2.5e-06 56.6 94 33.0
FAN07G2609 Fragaria x ananassa HOM05D000072 ORTHO05D022715 2.5e-06 56.6 94 33.0
BcaC05g26464 Brassica carinata HOM05D009238 ORTHO05D024301 4.3e-06 55.8 86 40.7
BolC5t31241H Brassica oleracea HOM05D009238 ORTHO05D024301 4.3e-06 55.8 86 40.7
CARHR026090 Cardamine hirsuta HOM05D000260 ORTHO05D000318 4.3e-06 55.8 244 23.8
Manes.14G106000 Manihot esculenta HOM05D000072 ORTHO05D000026 4.3e-06 55.8 209 26.8
Dinv21045 Davidia involucrata HOM05D008908 ORTHO05D010362 5.6e-06 55.5 80 41.2
Lalb_Chr06g0165881 Lupinus albus HOM05D000260 ORTHO05D000318 5.6e-06 55.5 75 45.3
Lalb_Chr06g0165911 Lupinus albus HOM05D000072 ORTHO05D000026 5.6e-06 55.5 75 45.3
AT1G25390 Arabidopsis thaliana HOM05D000260 ORTHO05D000318 7.3e-06 55.1 240 23.3
Migut.L01038 Erythranthe guttata HOM05D000072 ORTHO05D000026 7.3e-06 55.1 115 31.3
Peaxi162Scf00179g00316 Petunia axillaris HOM05D000260 ORTHO05D000318 7.3e-06 55.1 108 30.6
RcHm_v2.0_Chr4g0434681 Rosa chinensis HOM05D000072 ORTHO05D000026 9.5e-06 54.7 88 37.5
SalBow8G3049 Salvia bowleyana HOM05D008908 ORTHO05D010362 9.5e-06 54.7 78 34.6


User provided reference genes

Program Settings