Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1709.5 834 100.0
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1638.2 834 95.0
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1458.7 833 84.2
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1398.3 832 80.0
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1395.2 839 78.9
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1392.1 827 79.9
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1382.5 832 80.6
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1370.5 826 79.2
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1365.5 831 79.4
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1363.2 832 77.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1362.4 832 77.2
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1356.3 832 77.3
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1355.9 832 77.2
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1352.8 839 77.8
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1347.0 838 77.3
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1344.7 826 78.3
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1342.8 822 77.7
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1339.3 830 76.3
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1337.8 964 69.6
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1333.9 835 76.3
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1325.5 831 77.3
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1323.9 831 77.7
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1320.8 832 76.4
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1320.8 828 76.2
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1320.4 833 75.8
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1316.2 835 75.7
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1314.7 835 75.6
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1314.7 831 76.3
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1313.9 835 75.6
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1313.5 832 76.0
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1312.7 835 76.0
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1312.0 832 76.2
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1308.1 841 75.3
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1307.0 841 75.4
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1306.2 842 75.3
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1305.4 833 75.8
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1304.7 827 75.2
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1297.3 827 75.2
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1295.0 825 74.7
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1294.3 831 75.9
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1293.1 828 75.4
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1292.3 834 74.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1290.8 829 74.1
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1289.6 833 73.2
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1288.9 831 75.1
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1286.9 829 74.5
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1286.6 835 73.4
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1286.6 838 74.3
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1283.9 835 73.7
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1283.1 835 74.1
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1281.9 830 74.0
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1281.2 837 72.3
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1280.0 832 73.3
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1279.6 833 74.8
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1278.5 828 73.3
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1276.2 831 75.2
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1275.0 829 72.9
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1273.1 829 73.2
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1271.5 841 73.0
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1270.8 829 73.2
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1267.3 832 73.1
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1266.5 869 71.2
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1264.2 833 73.1
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1256.9 841 71.9
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1253.8 836 72.5
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1251.9 779 77.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1231.1 850 70.0
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1227.2 825 71.2
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1226.5 837 71.1
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1223.0 836 70.0
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1215.3 830 71.8
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1209.9 839 69.6
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1203.3 848 69.9
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1202.2 790 74.3
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1199.5 839 69.1
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1195.6 841 69.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1195.3 835 69.1
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1195.3 855 69.0
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1192.2 940 64.1
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1191.8 837 68.7
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1189.9 837 68.8
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1188.3 833 69.0
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1188.3 839 68.2
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1187.2 841 69.0
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1187.2 838 68.9
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1184.1 835 67.7
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1179.1 835 68.4
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1172.9 829 68.8
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1172.1 841 68.4
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1167.9 760 74.6
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1166.8 838 68.1
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1153.3 834 66.7
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1122.8 831 63.7
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1120.5 833 64.0
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1091.6 829 63.4
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1080.9 832 62.9
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 3.7e-309 1064.7 838 63.1
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 9.0e-300 1033.5 669 73.7
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 3.8e-298 1028.1 610 79.3
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 9.7e-286 986.9 831 60.9
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.5e-275 951.8 584 78.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 2.0e-243 846.3 886 48.8
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 6.6e-242 841.3 850 51.4
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 2.8e-240 835.9 857 49.4
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.1e-220 770.8 838 49.4
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 8.2e-184 648.3 464 68.3
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 6.3e-176 622.1 398 73.1
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 6.5e-149 532.3 397 67.3
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.2e-139 501.5 367 64.9
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.6e-139 501.1 366 64.5
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 3.1e-122 443.7 264 79.2
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.8e-106 391.3 233 78.1
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 5.8e-105 386.3 872 32.3
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 5.8e-105 386.3 824 34.5
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 9.9e-105 385.6 298 67.1
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.8e-99 367.5 482 46.3
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 7.8e-94 349.4 265 63.0
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.6e-92 343.2 195 80.0
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 6.2e-91 339.7 307 55.0
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 5.3e-90 336.7 728 32.4
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 6.9e-90 336.3 196 80.6
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 4.4e-89 333.6 1132 25.6
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 3.5e-86 323.9 191 80.1
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 3.0e-85 320.9 239 68.6
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 9.6e-68 262.7 565 34.7
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 7.7e-49 199.9 192 51.0
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 7.9e-46 189.9 202 49.0
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 7.9e-46 189.9 202 49.0
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.0e-45 189.5 164 55.5
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.1e-42 176.4 102 79.4
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 5.0e-40 170.6 126 66.7
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.7e-38 164.9 99 76.8
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.9e-32 144.8 78 84.6
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.3e-27 127.1 76 75.0
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 3.1e-26 124.8 69 81.2
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 7.0e-26 123.6 96 61.5
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.7e-24 119.0 198 37.9
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 2.9e-24 118.2 78 73.1
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 1.2e-20 106.3 122 45.1
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 9.8e-20 103.2 78 62.8
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.2e-19 102.1 116 49.1
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.3e-19 100.5 64 70.3
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.1e-18 98.2 65 61.5
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 9.2e-18 96.7 53 79.2
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 7.7e-17 93.6 115 46.1
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 5.0e-16 90.9 100 49.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 5.2e-13 80.9 59 57.6
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.4e-10 72.0 98 37.8
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 3.9e-08 64.7 82 45.1
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 5.0e-08 64.3 143 30.8
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 3.6e-06 58.2 147 29.3
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 4.7e-06 57.8 148 28.4


User provided reference genes

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