Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 3.8e-249 864.4 435 100.0
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 1.8e-227 792.3 459 89.1
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 2.2e-225 785.4 461 88.1
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 3.1e-203 711.8 412 85.0
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 3.2e-200 701.8 414 82.4
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 7.2e-200 700.7 418 82.1
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 2.4e-195 685.6 430 78.4
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 1.2e-194 683.3 415 80.7
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 7.7e-194 680.6 412 81.3
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 2.9e-193 678.7 412 80.6
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.8e-193 678.3 415 80.5
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 8.6e-193 677.2 424 79.2
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 8.0e-191 670.6 417 79.4
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 2.3e-190 669.1 419 79.2
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 4.0e-190 668.3 412 79.1
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 8.9e-190 667.2 412 80.1
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 5.7e-189 664.5 417 79.4
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 7.5e-189 664.1 415 77.8
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.3e-188 663.3 414 78.3
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 3.5e-186 655.2 498 67.5
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 3.5e-186 655.2 411 78.1
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 5.0e-185 651.4 414 77.1
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 1.1e-184 650.2 428 75.5
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 5.6e-184 647.9 416 75.2
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 1.2e-183 646.7 412 76.2
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 2.8e-183 645.6 415 75.9
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 3.6e-183 645.2 412 76.2
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 1.0e-182 643.7 415 74.7
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.8e-182 642.9 414 76.8
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 1.2e-181 640.2 412 74.8
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.5e-181 639.8 417 75.8
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 2.6e-181 639.0 413 75.3
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 7.5e-181 637.5 410 75.4
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 7.5e-181 637.5 410 75.6
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 1.3e-180 636.7 431 73.8
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 3.7e-180 635.2 417 74.1
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 3.5e-178 628.6 413 75.5
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 7.8e-178 627.5 373 82.6
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 1.7e-177 626.3 417 73.1
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 3.0e-177 625.5 410 73.2
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 1.1e-176 623.6 410 74.1
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 1.5e-176 623.2 414 72.9
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.5e-176 623.2 467 70.0
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 7.3e-176 620.9 408 74.0
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 9.5e-176 620.5 411 72.5
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 2.1e-175 619.4 490 65.5
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 2.1e-175 619.4 413 71.7
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 2.0e-173 612.8 417 72.4
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 2.0e-173 612.8 411 72.5
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 7.5e-173 610.9 413 75.8
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 7.5e-173 610.9 421 71.3
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 1.7e-172 609.8 422 73.0
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 1.9e-171 606.3 421 71.3
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 1.2e-170 603.6 423 70.4
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 4.6e-170 601.7 390 76.9
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 7.8e-170 600.9 361 80.1
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.3e-169 600.1 414 72.9
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.7e-169 599.7 414 72.7
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.5e-168 596.7 401 72.3
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 8.3e-164 580.9 428 66.6
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 3.2e-163 578.9 427 66.3
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.6e-162 576.6 396 71.2
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 1.3e-161 573.5 412 70.6
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 2.3e-161 572.8 417 68.6
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 1.1e-158 563.9 407 65.8
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 1.6e-154 550.1 420 65.5
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 2.1e-154 549.7 349 77.9
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.3e-153 547.0 447 62.9
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 2.8e-151 539.3 357 73.9
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 8.1e-151 537.7 331 81.9
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 2.4e-150 536.2 356 74.4
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 6.9e-150 534.6 342 77.8
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 9.9e-149 530.8 476 61.6
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 9.9e-141 504.2 428 59.6
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.0e-126 455.7 279 80.3
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-122 444.1 293 73.7
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 1.6e-122 443.7 399 57.1
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 3.0e-121 439.5 268 80.2
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 3.7e-119 432.6 276 76.8
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 4.8e-119 432.2 404 53.7
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 1.4e-118 430.6 277 75.5
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.3e-118 428.7 422 50.9
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 4.2e-115 419.1 426 48.8
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.6e-109 399.8 424 49.1
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 2.0e-104 383.6 405 49.4
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 1.4e-102 377.5 416 47.6
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 1.6e-98 364.0 276 63.8
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.1e-94 351.3 315 56.2
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 2.6e-93 346.7 265 67.2
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 6.5e-92 342.0 550 38.4
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 8.0e-90 335.1 293 61.1
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.2e-89 332.4 426 41.8
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 1.5e-88 330.9 446 41.5
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 1.7e-87 327.4 401 44.4
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 1.7e-87 327.4 423 42.3
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.1e-86 324.7 427 41.7
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 2.5e-83 313.5 264 59.1
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.5e-83 312.4 418 40.4
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 3.6e-82 309.7 190 81.1
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 1.2e-80 304.7 429 40.6
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.6e-77 294.3 422 40.8
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 6.8e-73 278.9 190 73.2
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.0e-64 250.8 430 35.8
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 3.2e-62 243.4 431 36.0
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 6.0e-61 239.2 369 39.0
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.0e-61 239.2 340 39.7
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 7.3e-59 232.3 201 62.7
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 2.6e-56 223.8 369 37.7
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 7.5e-56 222.2 159 71.1
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 4.9e-55 219.5 143 74.8
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 1.6e-53 214.5 263 48.7
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 2.6e-48 197.2 376 34.3
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.8e-48 196.1 328 36.3
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 3.5e-45 186.8 268 42.9
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 1.5e-43 181.4 159 62.9
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 1.2e-40 171.8 233 47.2
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.4e-40 170.2 125 67.2
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 4.9e-39 166.4 112 75.0
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 7.1e-38 162.5 328 33.8
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.7e-37 160.6 133 55.6
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.5e-35 154.8 114 71.1
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 2.5e-35 154.1 114 71.1
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.5e-35 154.1 125 56.8
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 8.1e-34 149.1 182 43.4
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.1e-33 148.7 273 34.8
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 8.4e-31 139.0 97 75.3
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 7.1e-30 136.0 206 38.8
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.0e-29 132.9 145 49.0
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-25 122.1 227 34.4
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.9e-25 119.4 170 39.4
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 4.5e-24 116.7 75 77.3
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 6.7e-20 102.8 55 81.8
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.8e-17 94.7 77 53.2
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 4.0e-17 93.6 80 53.8
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.7e-15 88.2 104 38.5
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 4.8e-10 70.1 257 26.1
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 1.1e-09 68.9 171 30.4
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 3.1e-09 67.4 85 48.2
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 1.9e-06 58.2 74 45.9
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 2.5e-06 57.8 47 57.4
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 4.2e-06 57.0 44 52.3
Solyc02g062200.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 9.3e-06 55.8 68 38.2


User provided reference genes

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