Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.7e-67 258.5 124 100.0
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 3.4e-62 241.5 124 93.5
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 8.7e-58 226.9 124 87.1
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 1.1e-57 226.5 122 86.9
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 1.1e-57 226.5 121 87.6
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 1.5e-57 226.1 121 86.8
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 1.5e-57 226.1 122 86.9
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 4.3e-57 224.6 121 86.8
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 5.7e-57 224.2 120 87.5
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 9.6e-57 223.4 124 83.9
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 9.6e-57 223.4 121 87.6
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.6e-56 222.6 121 86.0
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 2.8e-56 221.9 125 85.6
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 2.8e-56 221.9 121 85.1
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 3.7e-56 221.5 120 85.8
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 8.2e-56 220.3 121 83.5
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 8.2e-56 220.3 125 84.0
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.4e-55 218.8 124 83.1
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.4e-55 218.8 124 83.1
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.4e-55 218.8 124 83.1
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 2.4e-55 218.8 124 83.1
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 3.1e-55 218.4 121 83.5
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 3.1e-55 218.4 124 82.3
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 6.9e-55 217.2 115 88.7
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 1.2e-54 216.5 121 83.5
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 1.2e-54 216.5 121 81.8
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 1.2e-54 216.5 124 82.3
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.5e-54 216.1 124 82.3
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 2.6e-54 215.3 120 83.3
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 2.6e-54 215.3 122 82.8
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 3.4e-54 214.9 124 81.5
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 4.5e-54 214.5 124 79.0
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 5.8e-54 214.2 124 81.5
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 1.0e-53 213.4 121 82.6
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.0e-53 213.4 124 79.8
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.3e-53 213.0 124 80.6
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 1.3e-53 213.0 121 82.6
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 1.7e-53 212.6 121 81.0
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 2.2e-53 212.2 124 82.3
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 2.9e-53 211.8 124 79.8
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 2.9e-53 211.8 121 82.6
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 3.8e-53 211.5 121 80.2
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 5.0e-53 211.1 121 80.2
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 5.0e-53 211.1 124 79.0
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 5.0e-53 211.1 124 79.0
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 5.0e-53 211.1 121 81.0
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 6.5e-53 210.7 120 80.8
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 1.1e-52 209.9 121 79.3
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 1.1e-52 209.9 105 95.2
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 1.9e-52 209.1 121 80.2
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 1.9e-52 209.1 121 79.3
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 3.2e-52 208.4 121 80.2
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 4.2e-52 208.0 120 80.8
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 5.5e-52 207.6 107 93.5
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 9.3e-52 206.8 124 79.0
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 9.3e-52 206.8 121 78.5
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 1.2e-51 206.5 121 78.5
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 3.5e-51 204.9 121 79.3
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 3.5e-51 204.9 129 76.7
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 6.1e-51 204.1 120 79.2
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 6.1e-51 204.1 121 77.7
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 6.1e-51 204.1 122 78.7
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 7.9e-51 203.8 115 80.0
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 7.9e-51 203.8 121 78.5
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 1.0e-50 203.4 121 78.5
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 1.0e-50 203.4 115 80.9
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 1.3e-50 203.0 115 80.0
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 1.3e-50 203.0 121 78.5
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.8e-50 202.6 115 80.9
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 1.8e-50 202.6 121 77.7
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 1.8e-50 202.6 124 75.8
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 2.3e-50 202.2 122 75.4
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 2.3e-50 202.2 112 83.9
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 2.3e-50 202.2 112 83.9
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 6.7e-50 200.7 122 75.4
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 8.7e-50 200.3 122 76.2
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 8.7e-50 200.3 121 76.9
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 1.1e-49 199.9 122 76.2
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 1.1e-49 199.9 120 76.7
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.5e-49 199.5 121 73.6
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 1.5e-49 199.5 121 77.7
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 1.9e-49 199.1 118 75.4
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 1.9e-49 199.1 124 75.8
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 2.5e-49 198.7 124 75.8
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 3.3e-49 198.4 105 85.7
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 4.3e-49 198.0 124 75.8
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 5.7e-49 197.6 124 76.6
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 1.3e-48 196.4 122 75.4
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 1.6e-48 196.1 124 75.8
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.2e-48 195.7 119 77.3
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 2.2e-48 195.7 119 75.6
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 2.8e-48 195.3 118 77.1
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 3.7e-48 194.9 124 75.0
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 4.8e-48 194.5 135 69.6
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 4.8e-48 194.5 119 74.8
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 5.3e-47 191.0 140 66.4
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 9.0e-47 190.3 108 83.3
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 2.2e-45 185.7 107 82.2
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 3.8e-45 184.9 111 75.7
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 5.0e-45 184.5 104 80.8
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 1.4e-44 183.0 130 68.5
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.9e-44 182.6 110 77.3
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.9e-44 182.6 104 80.8
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 4.2e-44 181.4 104 82.7
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 4.2e-44 181.4 104 82.7
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 5.5e-44 181.0 107 77.6
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 5.5e-44 181.0 104 80.8
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 7.2e-44 180.6 104 78.8
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 7.2e-44 180.6 105 80.0
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 9.4e-44 180.3 104 78.8
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 6.1e-43 177.6 115 71.3
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 3.0e-42 175.3 123 68.3
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 6.7e-42 174.1 98 79.6
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 4.3e-41 171.4 105 74.3
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 7.4e-41 170.6 105 74.3
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.7e-40 169.5 97 81.4
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 2.2e-40 169.1 104 74.0
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 3.7e-40 168.3 123 69.9
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 2.0e-38 162.5 85 87.1
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 1.0e-37 160.2 105 71.4
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 1.0e-37 160.2 105 71.4
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 1.0e-37 160.2 105 71.4
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 6.7e-34 147.5 106 67.9
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 8.2e-32 140.6 111 56.8
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 5.5e-28 127.9 66 84.8
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 5.5e-28 127.9 122 54.9
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 5.5e-28 127.9 94 63.8
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 7.2e-28 127.5 109 54.1
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 2.8e-24 115.5 65 81.5
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 1.2e-19 100.1 57 78.9
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 2.1e-19 99.4 66 69.7
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 2.3e-18 95.9 67 67.2
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 2.4e-15 85.9 65 60.0
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 5.0e-13 78.2 44 75.0
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 1.5e-12 76.6 50 64.0
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 4.0e-10 68.6 50 70.0
FAN02G4440 Fragaria x ananassa HOM05D012050 ORTHO05D011158 4.5e-06 55.1 26 88.5


User provided reference genes

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