Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G096301 Populus trichocarpa HOM05D005422 ORTHO05D006578 3.2e-74 281.6 133 100.0
Potri.008G145800 Populus trichocarpa HOM05D000028 ORTHO05D000390 4.7e-17 91.7 54 87.0
Sabra08G0110800 Salix brachista HOM05D000028 ORTHO05D000390 4.1e-13 78.6 54 79.6
Manes.05G089500 Manihot esculenta HOM05D000028 ORTHO05D000390 1.2e-12 77.0 54 75.9
Lalb_Chr11g0066461 Lupinus albus HOM05D000028 ORTHO05D000390 4.5e-12 75.1 56 69.6
TPR.G18760 Trifolium pratense HOM05D000028 ORTHO05D000390 5.9e-12 74.7 56 64.3
Atru.chr11.1979 Acer truncatum HOM05D000028 ORTHO05D000390 7.8e-12 74.3 85 54.1
Medtr3g090550 Medicago truncatula HOM05D000028 ORTHO05D000390 7.8e-12 74.3 56 62.5
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 7.8e-12 74.3 58 65.5
Ca_16657_v3 Cicer arietinum L. HOM05D000028 ORTHO05D000390 1.3e-11 73.6 56 64.3
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.3e-11 73.6 42 81.0
Thecc.02G247300 Theobroma cacao HOM05D000028 ORTHO05D000390 1.7e-11 73.2 54 74.1
Prupe.1G257700 Prunus persica HOM05D000028 ORTHO05D000390 6.6e-11 71.2 56 69.6
COL.COLO4_19532 Corchorus olitorius HOM05D000028 ORTHO05D000390 8.6e-11 70.9 66 66.7
Lj1g0021273 Lotus japonicus HOM05D000028 ORTHO05D000390 1.5e-10 70.1 56 62.5
Lj3A1050T29 Lonicera japonica HOM05D000028 ORTHO05D000390 1.9e-10 69.7 53 66.0
MD13G1088500 Malus domestica HOM05D000028 ORTHO05D000390 4.3e-10 68.6 56 66.1
CANSAT01G2126 Cannabis sativa HOM05D000028 ORTHO05D000390 7.3e-10 67.8 56 64.3
Psat5g080200 Pisum sativum HOM05D000028 ORTHO05D000390 7.3e-10 67.8 56 57.1
Cc11_g14390 Coffea canephora HOM05D000028 ORTHO05D000390 1.2e-09 67.0 52 67.3
Gohir.D05G320800 Gossypium hirsutum HOM05D000028 ORTHO05D000390 1.2e-09 67.0 54 68.5
Gorai.009G344100 Gossypium raimondii HOM05D000028 ORTHO05D000390 1.2e-09 67.0 54 68.5
Potri.001G032100 Populus trichocarpa HOM05D000028 ORTHO05D000390 1.2e-09 67.0 55 72.7
Dinv31009 Davidia involucrata HOM05D000028 ORTHO05D000390 1.6e-09 66.6 51 66.7
Dinv31093 Davidia involucrata HOM05D000028 ORTHO05D000390 1.6e-09 66.6 51 66.7
MD16G1088800 Malus domestica HOM05D000028 ORTHO05D000390 2.1e-09 66.2 56 64.3
EL10Ac6g13633 Beta vulgaris HOM05D000028 ORTHO05D000390 2.8e-09 65.9 55 67.3
Duzib268G0728 Durio zibethinus HOM05D000028 ORTHO05D000390 2.8e-09 65.9 54 68.5
Eucgr.B02544 Eucalyptus grandis HOM05D000028 ORTHO05D000390 2.8e-09 65.9 101 44.6
Prupe.1G257400 Prunus persica HOM05D000028 ORTHO05D000390 4.7e-09 65.1 54 66.7
MD13G1088800 Malus domestica HOM05D000028 ORTHO05D000390 6.1e-09 64.7 54 63.0
FvH4_4g34870 Fragaria vesca HOM05D000028 ORTHO05D000390 8.0e-09 64.3 55 61.8
FAN12G2552 Fragaria x ananassa HOM05D000028 ORTHO05D000390 8.0e-09 64.3 55 61.8
Gohir.A05G318500 Gossypium hirsutum HOM05D000028 ORTHO05D000390 8.0e-09 64.3 54 66.7
RcHm_v2.0_Chr4g0444301 Rosa chinensis HOM05D000028 ORTHO05D000390 8.0e-09 64.3 55 61.8
Sabra03G0143700 Salix brachista HOM05D000028 ORTHO05D000390 1.0e-08 63.9 57 66.7
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.4e-08 63.5 45 73.3
Eucgr.B02552 Eucalyptus grandis HOM05D000028 ORTHO05D000390 1.8e-08 63.2 54 64.8
FAN07G0468 Fragaria x ananassa HOM05D000028 ORTHO05D000390 1.8e-08 63.2 55 61.8
FAN22G1810 Fragaria x ananassa HOM05D000028 ORTHO05D000390 1.8e-08 63.2 55 61.8
Phvul.009G135500 Phaseolus vulgaris HOM05D000028 ORTHO05D000390 1.8e-08 63.2 53 60.4
Potri.003G192900 Populus trichocarpa HOM05D000028 ORTHO05D000390 2.3e-08 62.8 55 65.5
GSVIVG01020187001 Vitis vinifera HOM05D000028 ORTHO05D000390 2.3e-08 62.8 54 63.0
Cpa.g.sc258.7 Carica papaya HOM05D000028 ORTHO05D000390 3.1e-08 62.4 51 60.8
CiPaw.05G148400 Carya illinoinensis HOM05D000028 ORTHO05D000390 3.1e-08 62.4 53 60.4
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 3.1e-08 62.4 98 42.9
ECA246G0871 Erigeron canadensis HOM05D000028 ORTHO05D000390 4.0e-08 62.0 59 55.9
FAN17G1270 Fragaria x ananassa HOM05D000028 ORTHO05D000390 4.0e-08 62.0 55 60.0
Prupe.1G257500 Prunus persica HOM05D000028 ORTHO05D000390 4.0e-08 62.0 52 63.5
PGR119G2078 Punica granatum HOM05D000028 ORTHO05D000390 4.0e-08 62.0 57 61.4
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 5.2e-08 61.6 56 55.4
Oeu028905.1 Olea europaea HOM05D000028 ORTHO05D000390 5.2e-08 61.6 51 62.7
GSVIVG01020189001 Vitis vinifera HOM05D000028 ORTHO05D000390 5.2e-08 61.6 78 46.2
arahy.Tifrunner.gnm1.ann1.DHKF98 Arachis hypogaea HOM05D000028 ORTHO05D000390 6.8e-08 61.2 61 55.7
arahy.Tifrunner.gnm1.ann1.DT2Q7E Arachis hypogaea HOM05D000028 ORTHO05D000390 6.8e-08 61.2 61 55.7
VMungo1309G2106 Vigna mungo HOM05D000028 ORTHO05D000390 6.8e-08 61.2 53 58.5
MD16G1088900 Malus domestica HOM05D000028 ORTHO05D000390 8.9e-08 60.8 54 57.4
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 1.2e-07 60.5 56 53.6
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 1.2e-07 60.5 56 51.8
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.2e-07 60.5 56 51.8
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.2e-07 60.5 56 51.8
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 1.2e-07 60.5 56 51.8
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.2e-07 60.5 56 51.8
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.2e-07 60.5 56 51.8
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.2e-07 60.5 40 65.0
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.2e-07 60.5 40 65.0
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.2e-07 60.5 59 57.6
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.5e-07 60.1 49 61.2
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.5e-07 60.1 43 67.4
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.0e-07 59.7 46 56.5
Hund25328 Selenicereus undatus HOM05D000028 ORTHO05D000390 2.0e-07 59.7 54 59.3
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 2.6e-07 59.3 59 54.2
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 2.6e-07 59.3 43 67.4
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 2.6e-07 59.3 46 67.4
Oeu001755.1 Olea europaea HOM05D000028 ORTHO05D000390 2.6e-07 59.3 54 55.6
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 2.6e-07 59.3 46 69.6
Nitab4.5_0010232g0020 Nicotiana tabacum HOM05D000028 ORTHO05D000390 3.4e-07 58.9 52 63.5
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 4.4e-07 58.5 40 60.0
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 4.4e-07 58.5 74 45.9
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 4.4e-07 58.5 43 65.1
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 4.4e-07 58.5 43 67.4
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 4.4e-07 58.5 43 67.4
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 4.4e-07 58.5 33 81.8
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 4.4e-07 58.5 43 67.4
Actinidia30189 Actinidia chinensis HOM05D000028 ORTHO05D000390 5.8e-07 58.2 54 53.7
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 5.8e-07 58.2 43 62.8
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 5.8e-07 58.2 43 62.8
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 5.8e-07 58.2 45 60.0
Glyma.06G123400 Glycine max HOM05D000028 ORTHO05D000390 5.8e-07 58.2 53 54.7
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 5.8e-07 58.2 43 62.8
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 5.8e-07 58.2 59 55.9
TAR629G3011 Trochodendron aralioides HOM05D000028 ORTHO05D000390 5.8e-07 58.2 55 60.0
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 7.5e-07 57.8 56 51.8
Oeu028903.1 Olea europaea HOM05D000028 ORTHO05D000390 7.5e-07 57.8 52 55.8
Sopen05g001870 Solanum pennellii HOM05D000028 ORTHO05D000390 7.5e-07 57.8 52 61.5
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 9.8e-07 57.4 40 60.0
CSS0044947 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 9.8e-07 57.4 54 48.1
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 9.8e-07 57.4 35 68.6
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 9.8e-07 57.4 46 67.4
Migut.L01434 Erythranthe guttata HOM05D000028 ORTHO05D000390 9.8e-07 57.4 54 61.1
FAN04G2236 Fragaria x ananassa HOM05D000028 ORTHO05D000390 9.8e-07 57.4 39 71.8
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 9.8e-07 57.4 48 64.6
RcHm_v2.0_Chr7g0194041 Rosa chinensis HOM05D000028 ORTHO05D000390 9.8e-07 57.4 39 71.8
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 9.8e-07 57.4 43 69.8
Prupe.5G177200 Prunus persica HOM05D000028 ORTHO05D000390 1.3e-06 57.0 39 69.2
Rhsim12G0123100 Rhododendron simsii HOM05D000028 ORTHO05D000390 1.3e-06 57.0 54 50.0
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 1.7e-06 56.6 40 60.0
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.7e-06 56.6 58 53.4
FvH4_5g05000 Fragaria vesca HOM05D000028 ORTHO05D000390 1.7e-06 56.6 39 69.2
FAN13G3193 Fragaria x ananassa HOM05D000028 ORTHO05D000390 1.7e-06 56.6 39 69.2
FAN18G2642 Fragaria x ananassa HOM05D000028 ORTHO05D000390 1.7e-06 56.6 39 69.2
Lsat_1_v5_gn_3_48880 Lactuca sativa HOM05D000028 ORTHO05D000390 1.7e-06 56.6 59 57.6
MD06G1178000 Malus domestica HOM05D000028 ORTHO05D000390 1.7e-06 56.6 39 69.2
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 1.7e-06 56.6 40 60.0
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.7e-06 56.6 38 63.2
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.2e-06 56.2 43 62.8
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.2e-06 56.2 43 62.8
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.2e-06 56.2 43 62.8
Migut.E00150 Erythranthe guttata HOM05D000028 ORTHO05D000390 2.2e-06 56.2 53 60.4
MSTRG.609 Avicennia marina HOM05D000028 ORTHO05D000390 2.9e-06 55.8 54 53.7
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 2.9e-06 55.8 43 60.5
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.9e-06 55.8 56 50.0
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 2.9e-06 55.8 59 54.2
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 3.7e-06 55.5 43 60.5
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.7e-06 55.5 43 62.8
PGSC0003DMG402004120 Solanum tuberosum HOM05D000028 ORTHO05D000390 3.7e-06 55.5 52 59.6
SGA_v2.0_scaffold171G38849 Striga asiatica HOM05D000028 ORTHO05D000390 3.7e-06 55.5 57 54.4
TPR.G4452 Trifolium pratense HOM05D000028 ORTHO05D000390 3.7e-06 55.5 54 53.7
Actinidia33052 Actinidia chinensis HOM05D000028 ORTHO05D000390 4.9e-06 55.1 55 56.4
Ca_04618_v3 Cicer arietinum L. HOM05D000028 ORTHO05D000390 4.9e-06 55.1 54 53.7
FAN18G0406 Fragaria x ananassa HOM05D000028 ORTHO05D000390 4.9e-06 55.1 39 69.2
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 4.9e-06 55.1 43 62.8
Nitab4.5_0001474g0060 Nicotiana tabacum HOM05D000028 ORTHO05D000390 4.9e-06 55.1 52 61.5
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 4.9e-06 55.1 40 65.0
Rhsim08G0169700 Rhododendron simsii HOM05D000028 ORTHO05D000390 4.9e-06 55.1 55 56.4
Atru.chr9.2427 Acer truncatum HOM05D000028 ORTHO05D000390 6.4e-06 54.7 55 56.4
MSTRG.610 Avicennia marina HOM05D000028 ORTHO05D000390 6.4e-06 54.7 51 56.9
ECA246G4509 Erigeron canadensis HOM05D000028 ORTHO05D000390 6.4e-06 54.7 59 52.5
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 6.4e-06 54.7 35 68.6
Nn4g22861 Nelumbo nucifera HOM05D000028 ORTHO05D000390 6.4e-06 54.7 54 51.9
SGA_v2.0_scaffold8G04233 Striga asiatica HOM05D000028 ORTHO05D000390 6.4e-06 54.7 58 55.2
vmacro16273 Vaccinium macrocarpon HOM05D000028 ORTHO05D000390 6.4e-06 54.7 54 48.1
Actinidia04977 Actinidia chinensis HOM05D000028 ORTHO05D000390 8.3e-06 54.3 38 71.1
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 8.3e-06 54.3 58 50.0
CiPaw.12G024700 Carya illinoinensis HOM05D000028 ORTHO05D000390 8.3e-06 54.3 39 66.7
Migut.L01433 Erythranthe guttata HOM05D000028 ORTHO05D000390 8.3e-06 54.3 54 51.9
Prupe.1G257300 Prunus persica HOM05D000028 ORTHO05D000390 8.3e-06 54.3 55 56.4
Rhsim08G0169500 Rhododendron simsii HOM05D000028 ORTHO05D000390 8.3e-06 54.3 55 54.5


User provided reference genes

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