Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 2.0e-206 722.2 384 100.0
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 3.5e-174 615.1 384 86.5
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 5.6e-95 352.1 399 54.4
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.8e-61 240.7 513 39.0
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 4.6e-57 226.1 412 42.5
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 6.2e-54 215.7 446 38.6
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.4e-53 214.5 457 37.4
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 3.1e-53 213.4 455 39.8
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 2.9e-51 206.8 412 38.8
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 2.9e-51 206.8 407 39.1
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.1e-50 204.9 413 39.0
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.1e-50 204.9 410 40.7
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 3.2e-50 203.4 421 38.0
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.1e-50 202.2 456 37.1
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 7.1e-50 202.2 391 40.7
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.1e-50 202.2 397 38.8
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.1e-50 202.2 397 38.8
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.1e-49 200.7 400 39.8
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 1.3e-48 198.0 409 39.1
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.8e-48 197.6 500 36.0
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.8e-48 197.6 406 38.9
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 2.3e-48 197.2 501 35.5
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 5.1e-48 196.1 427 38.6
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.1e-47 194.9 466 36.3
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.5e-47 194.5 446 37.7
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 1.5e-47 194.5 411 39.9
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.5e-47 193.7 399 37.6
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 2.1e-46 190.7 388 40.7
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.1e-46 190.7 261 46.7
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.8e-46 190.3 397 38.8
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.8e-46 190.3 438 37.7
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 4.8e-46 189.5 402 38.3
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.5e-44 184.5 449 36.1
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.5e-44 184.5 394 39.1
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 2.0e-44 184.1 397 36.3
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 2.2e-43 180.6 443 35.9
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.4e-42 177.9 402 35.3
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 7.1e-42 175.6 424 36.3
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.1e-41 174.1 520 32.1
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 4.6e-41 172.9 420 37.1
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 4.6e-41 172.9 386 35.5
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 5.1e-40 169.5 390 36.7
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 1.9e-39 167.5 465 32.9
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 2.5e-39 167.2 391 35.0
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.3e-38 164.9 417 34.8
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 1.3e-38 164.9 236 45.8
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 1.6e-38 164.5 443 34.1
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 3.7e-38 163.3 438 33.8
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 4.8e-38 162.9 451 32.6
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 8.2e-38 162.2 445 33.9
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.1e-37 161.8 468 33.8
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.4e-37 161.4 472 32.6
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 1.8e-37 161.0 383 36.6
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 2.4e-37 160.6 458 33.2
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 2.4e-37 160.6 383 33.7
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 2.4e-37 160.6 389 36.2
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.1e-37 160.2 396 34.8
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 3.1e-37 160.2 462 32.5
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 3.1e-37 160.2 374 36.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 4.1e-37 159.8 458 32.5
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 5.3e-37 159.5 415 34.5
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.5e-36 157.9 472 32.6
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 1.5e-36 157.9 385 36.9
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 4.5e-36 156.4 430 34.7
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.3e-35 154.8 472 32.4
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 2.2e-35 154.1 446 34.3
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 2.9e-35 153.7 485 30.7
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 2.9e-35 153.7 485 30.7
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 5.0e-35 152.9 454 32.6
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.9e-34 151.0 403 32.8
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 2.5e-34 150.6 420 35.5
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 3.2e-34 150.2 476 29.4
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 4.2e-34 149.8 551 31.0
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 5.5e-34 149.4 404 34.7
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 5.5e-34 149.4 459 33.1
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 1.2e-33 148.3 382 34.3
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.1e-33 147.5 496 32.1
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 2.1e-33 147.5 431 31.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 2.7e-33 147.1 487 31.8
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 4.6e-33 146.4 419 34.4
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 6.1e-33 146.0 430 33.3
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 6.1e-33 146.0 501 30.3
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 7.9e-33 145.6 517 30.4
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.8e-32 144.4 437 32.0
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 3.9e-32 143.3 430 34.2
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 7.4e-31 139.0 446 31.2
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 7.4e-31 139.0 499 30.3
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 9.7e-31 138.7 424 32.3
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.6e-30 137.9 549 27.9
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 1.6e-30 137.9 420 30.5
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 2.2e-30 137.5 446 31.2
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 6.3e-30 136.0 434 31.8
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 6.3e-30 136.0 461 32.1
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.4e-29 134.8 229 44.5
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.4e-29 134.0 304 35.9
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.4e-29 134.0 471 29.7
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 4.1e-29 133.3 434 31.6
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 5.3e-29 132.9 326 32.5
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.0e-28 131.0 462 30.1
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.6e-28 130.6 473 31.1
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 3.4e-28 130.2 160 50.0
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 4.5e-28 129.8 386 33.9
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.3e-27 128.3 496 29.0
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 3.8e-27 126.7 391 32.2
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 6.5e-27 125.9 424 31.4
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 5.5e-26 122.9 576 28.5
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 5.5e-26 122.9 524 28.4
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 1.2e-25 121.7 365 30.7
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.6e-25 121.3 131 49.6
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-25 121.3 404 32.2
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-25 121.3 404 32.2
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 1.4e-24 118.2 439 30.5
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.8e-24 117.9 522 27.0
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 5.1e-24 116.3 430 29.3
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 5.1e-24 116.3 153 47.7
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.5e-23 114.8 493 27.6
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 2.0e-23 114.4 195 40.0
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 4.4e-23 113.2 476 26.7
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 7.4e-23 112.5 164 44.5
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.1e-21 108.6 491 27.7
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 5.9e-20 102.8 123 44.7
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 7.7e-20 102.4 519 25.6
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 7.7e-20 102.4 372 28.5
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.2e-19 100.9 424 27.4
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 5.0e-19 99.8 531 25.2
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.9e-18 97.8 253 34.8
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.5e-18 97.4 158 39.9
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 5.5e-18 96.3 538 24.5
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 9.4e-18 95.5 348 30.2
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 3.6e-17 93.6 103 47.6
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 4.7e-17 93.2 121 40.5
Cfa008363 Carpinus fangiana HOM05D004833 ORTHO05D005671 6.1e-17 92.8 200 38.5
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 7.4e-15 85.9 161 36.6
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.3e-14 85.1 391 27.1
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 4.8e-14 83.2 159 37.1
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.6e-12 77.4 162 37.0
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 3.5e-12 77.0 127 40.2
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.0e-11 75.5 112 40.2
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.7e-11 74.7 292 33.6
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.7e-11 74.7 52 65.4
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 6.1e-09 66.2 57 52.6
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 1.8e-08 64.7 109 32.1
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 2.6e-07 60.8 110 37.3
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 9.7e-07 58.9 118 37.3
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 1.7e-06 58.2 112 42.9
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 6.3e-06 56.2 129 39.5
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 6.3e-06 56.2 121 36.4
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 6.3e-06 56.2 121 36.4


User provided reference genes

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