Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 6.2e-88 327.4 163 100.0
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 7.1e-76 287.3 150 95.3
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 7.4e-73 277.3 160 85.0
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 3.7e-72 275.0 156 85.9
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 3.7e-72 275.0 161 83.2
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 4.8e-72 274.6 163 82.8
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 2.4e-71 272.3 162 85.2
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 6.9e-71 270.8 162 82.7
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 9.0e-71 270.4 154 85.1
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 9.0e-71 270.4 158 82.9
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 9.0e-71 270.4 157 86.0
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 9.0e-71 270.4 157 86.0
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 2.6e-70 268.9 159 84.3
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 3.4e-70 268.5 161 82.0
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 2.9e-69 265.4 161 78.3
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 2.9e-69 265.4 161 78.3
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 5.0e-69 264.6 160 84.4
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 1.1e-68 263.5 151 86.1
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 1.1e-68 263.5 161 77.6
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 1.9e-68 262.7 160 83.1
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 1.9e-68 262.7 158 81.0
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 3.2e-68 261.9 160 80.6
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 3.2e-68 261.9 160 78.8
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.2e-68 261.9 158 81.0
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.2e-68 261.9 158 81.0
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 4.2e-68 261.5 158 81.0
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 5.5e-68 261.2 161 79.5
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 5.5e-68 261.2 162 80.2
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 2.7e-67 258.8 157 80.3
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 2.7e-67 258.8 158 80.4
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 3.6e-67 258.5 156 81.4
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 4.6e-67 258.1 158 79.7
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 4.6e-67 258.1 154 83.8
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 1.0e-66 256.9 156 81.4
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.4e-66 256.5 159 80.5
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 1.8e-66 256.1 160 80.0
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.8e-66 256.1 161 77.0
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 3.0e-66 255.4 159 79.9
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 3.0e-66 255.4 156 80.8
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 3.0e-66 255.4 160 77.5
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 3.9e-66 255.0 160 77.5
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 3.9e-66 255.0 158 77.8
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 8.8e-66 253.8 154 78.6
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.5e-65 253.1 149 82.6
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 1.5e-65 253.1 149 82.6
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 2.0e-65 252.7 158 78.5
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 2.5e-65 252.3 158 75.9
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 4.3e-65 251.5 157 77.1
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 4.3e-65 251.5 158 76.6
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 5.7e-65 251.1 156 79.5
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.7e-64 249.6 157 79.0
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 2.2e-64 249.2 154 81.2
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 3.7e-64 248.4 158 75.3
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 4.8e-64 248.1 158 75.9
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 6.3e-64 247.7 154 76.0
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 8.2e-64 247.3 152 79.6
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 1.1e-63 246.9 152 78.9
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.4e-63 246.5 151 79.5
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 1.4e-63 246.5 156 76.3
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 1.4e-63 246.5 156 76.3
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.4e-63 246.5 156 76.9
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.4e-63 246.5 154 79.2
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 1.8e-63 246.1 160 75.6
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 4.1e-63 245.0 154 77.3
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 4.1e-63 245.0 159 76.1
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 4.1e-63 245.0 152 79.6
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 5.3e-63 244.6 153 79.1
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 6.9e-63 244.2 152 75.0
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 1.2e-62 243.4 156 75.6
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.5e-62 243.0 180 68.9
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 2.0e-62 242.7 155 76.1
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 2.6e-62 242.3 151 77.5
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 7.7e-62 240.7 149 79.2
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 6.5e-61 237.7 154 76.6
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 6.5e-61 237.7 154 76.6
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.4e-60 236.5 159 75.5
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.9e-60 236.1 144 79.2
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 2.5e-60 235.7 156 70.5
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 2.5e-60 235.7 154 76.6
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 2.5e-60 235.7 154 76.6
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 3.2e-60 235.3 151 74.8
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 4.2e-60 235.0 154 76.0
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 5.5e-60 234.6 154 76.0
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 7.2e-60 234.2 154 75.3
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 7.2e-60 234.2 154 76.0
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 7.2e-60 234.2 156 73.7
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 7.2e-60 234.2 157 73.2
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 9.4e-60 233.8 154 74.0
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 9.4e-60 233.8 154 74.0
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 9.4e-60 233.8 154 75.3
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 2.1e-59 232.6 157 74.5
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 3.6e-59 231.9 154 73.4
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 3.0e-58 228.8 183 66.1
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 2.6e-57 225.7 155 72.3
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.8e-56 222.2 176 65.3
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 4.1e-55 218.4 181 61.9
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 2.8e-48 195.7 154 59.7
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 1.7e-45 186.4 114 83.3
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 6.1e-43 177.9 122 73.8
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 1.0e-42 177.2 155 54.8
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 1.0e-42 177.2 91 92.3
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 1.4e-42 176.8 149 61.7
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 3.0e-42 175.6 91 90.1
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 1.5e-41 173.3 263 43.7
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.4e-39 166.8 162 58.0
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 4.1e-39 165.2 153 52.3
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.3e-37 160.2 110 71.8
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 1.2e-35 153.7 157 49.7
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.4e-34 150.2 153 51.6
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 7.5e-33 144.4 154 47.4
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 9.5e-28 127.5 87 72.4
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 4.0e-26 122.1 140 42.1
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 3.6e-19 99.0 63 74.6
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 5.2e-18 95.1 76 64.5
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 3.2e-15 85.9 64 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 3.5e-14 82.4 88 48.9
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 7.8e-14 81.3 49 75.5
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 2.3e-13 79.7 55 72.7
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 5.0e-13 78.6 45 82.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 1.2e-11 73.9 139 33.8
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 5.2e-10 68.6 37 89.2
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 3.4e-09 65.9 37 83.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.5e-09 64.7 50 64.0


User provided reference genes

Program Settings