Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 3.9e-61 238.0 128 100.0
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.7e-54 215.3 128 85.2
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.5e-54 214.9 128 85.2
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 7.9e-54 213.8 128 89.8
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.9e-52 209.1 127 82.7
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 7.4e-52 207.2 132 81.1
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 7.4e-52 207.2 128 82.0
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.1e-50 203.4 128 82.8
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 6.9e-50 200.7 129 80.6
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 6.9e-50 200.7 128 83.6
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.5e-49 199.5 128 82.0
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.0e-49 199.1 128 78.1
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.0e-49 199.1 128 81.2
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.6e-49 198.7 128 79.7
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.4e-49 198.4 130 79.2
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 4.5e-49 198.0 128 79.7
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 4.5e-49 198.0 127 78.0
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 7.6e-49 197.2 129 81.4
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.3e-48 196.4 128 78.1
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.4e-47 193.0 128 76.6
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.9e-47 192.6 128 76.6
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.9e-47 192.6 128 75.8
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.9e-47 192.6 128 75.8
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.2e-47 191.8 128 78.9
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 7.1e-47 190.7 123 78.9
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 3.5e-46 188.3 131 76.3
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.3e-45 186.4 128 71.9
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.3e-45 186.4 128 78.9
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 76.6
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 78.1
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 5.1e-45 184.5 129 76.0
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.7e-45 184.1 128 78.1
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 6.7e-45 184.1 128 76.6
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 8.7e-45 183.7 128 74.2
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.1e-44 183.3 132 73.5
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 2.5e-44 182.2 130 76.2
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.3e-43 179.9 128 72.7
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.6e-43 179.5 129 71.3
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.6e-43 179.5 133 72.9
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.6e-43 179.5 131 71.8
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.6e-43 179.5 131 71.8
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.6e-43 179.5 131 74.8
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 2.2e-43 179.1 130 74.6
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.2e-43 179.1 131 72.5
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 2.2e-43 179.1 130 73.8
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.8e-43 178.7 128 71.1
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.8e-43 178.7 130 73.8
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 3.7e-43 178.3 131 74.0
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 4.8e-43 177.9 134 75.4
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 6.3e-43 177.6 130 74.6
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 6.3e-43 177.6 129 73.6
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 8.2e-43 177.2 127 74.0
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 8.2e-43 177.2 129 71.3
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 8.2e-43 177.2 129 71.3
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 8.2e-43 177.2 129 75.2
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 1.1e-42 176.8 131 75.6
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.4e-42 176.4 129 72.9
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.4e-42 175.6 131 74.0
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.1e-42 175.3 128 72.7
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 6.9e-42 174.1 128 71.9
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 9.0e-42 173.7 130 73.8
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 9.0e-42 173.7 104 83.7
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 9.0e-42 173.7 134 71.6
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.2e-41 173.3 128 70.3
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.2e-41 173.3 128 70.3
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.2e-41 173.3 128 70.3
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.6e-41 172.2 134 71.6
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.6e-41 172.2 134 71.6
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 5.9e-41 171.0 130 73.1
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 5.9e-41 171.0 136 69.9
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 7.7e-41 170.6 128 72.7
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 7.7e-41 170.6 128 70.3
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 7.7e-41 170.6 104 81.7
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.3e-40 169.9 128 74.2
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.3e-40 169.9 132 71.2
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.3e-40 169.9 124 75.0
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-40 169.1 128 69.5
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.9e-40 168.7 128 71.1
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 2.9e-40 168.7 131 69.5
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.9e-40 168.7 104 82.7
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 5.0e-40 167.9 129 69.0
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 5.0e-40 167.9 132 69.7
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 5.0e-40 167.9 133 69.2
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 5.0e-40 167.9 133 69.2
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 6.5e-40 167.5 130 70.8
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 6.5e-40 167.5 126 69.0
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.1e-39 166.8 132 68.9
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.5e-39 165.6 132 72.7
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 2.5e-39 165.6 132 72.0
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.5e-39 165.6 132 70.5
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.5e-39 165.6 132 70.5
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 2.5e-39 165.6 118 72.9
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 2.5e-39 165.6 128 70.3
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 3.2e-39 165.2 128 69.5
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 3.2e-39 165.2 128 69.5
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 5.5e-39 164.5 134 70.1
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 7.2e-39 164.1 132 69.7
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 9.4e-39 163.7 128 66.4
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 9.4e-39 163.7 130 69.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.2e-38 163.3 128 68.8
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.2e-38 163.3 96 84.4
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.2e-38 163.3 128 67.2
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.6e-38 162.9 103 80.6
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 1.6e-38 162.9 131 70.2
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.6e-38 162.9 130 67.7
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.7e-38 162.2 128 68.8
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 2.7e-38 162.2 132 67.4
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 2.7e-38 162.2 132 67.4
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 2.7e-38 162.2 132 67.4
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 6.1e-38 161.0 115 73.9
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.1e-38 161.0 96 83.3
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 7.9e-38 160.6 124 69.4
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.9e-38 160.6 128 68.0
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.9e-38 160.6 128 68.0
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 2.3e-37 159.1 140 64.3
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 3.0e-37 158.7 129 68.2
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.1e-36 156.8 126 67.5
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 4.3e-36 154.8 130 65.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 7.4e-36 154.1 105 76.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.3e-35 153.3 128 65.6
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.3e-35 153.3 129 66.7
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.7e-35 152.9 124 61.3
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.7e-35 152.9 130 65.4
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 3.7e-35 151.8 130 65.4
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.8e-34 149.4 130 63.8
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.4e-34 149.1 127 59.8
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 3.1e-34 148.7 126 64.3
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.5e-33 144.8 94 78.7
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.3e-32 143.3 87 81.6
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 6.5e-32 141.0 89 80.9
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 4.2e-31 138.3 85 81.2
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 7.9e-30 134.0 88 79.5
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.0e-29 133.7 128 60.2
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.5e-28 129.8 81 77.8
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.6e-28 129.0 76 82.9
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.7e-27 126.3 104 61.5
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.7e-27 126.3 78 80.8
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.8e-27 124.8 93 66.7
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 9.1e-26 120.6 94 69.1
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 9.1e-26 120.6 113 58.4
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.5e-25 118.6 93 69.9
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 5.9e-25 117.9 124 55.6
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.3e-24 116.7 69 87.0
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 7.2e-23 110.9 122 53.3
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 8.0e-22 107.5 128 55.5
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.8e-21 106.3 101 60.4
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 9.7e-20 100.5 78 70.5
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.2e-19 99.4 72 69.4
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 5.3e-18 94.7 96 51.0
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.0e-17 92.8 68 70.6
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.5e-17 91.7 46 100.0
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.2e-15 85.1 69 68.1
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 2.7e-14 82.4 101 48.5
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 3.4e-12 75.5 68 57.4
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 5.5e-07 58.2 55 54.5


User provided reference genes

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