Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 4.4e-148 528.1 301 100.0
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 2.4e-130 469.2 309 88.7
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 4.4e-103 378.6 305 71.5
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 2.4e-101 372.9 302 70.5
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 4.1e-101 372.1 301 71.8
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.3e-99 367.1 302 70.2
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.2e-99 366.3 302 70.9
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 5.0e-99 365.2 303 70.0
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 5.0e-99 365.2 304 68.1
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.4e-98 363.6 301 69.8
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.9e-98 363.2 302 69.2
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 2.5e-98 362.8 300 70.3
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 2.1e-97 359.8 301 68.8
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.7e-97 358.6 301 68.4
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 6.1e-97 358.2 301 68.8
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.4e-96 357.1 309 68.6
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.4e-96 357.1 301 68.1
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 1.4e-96 357.1 303 70.6
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.8e-96 356.7 302 67.5
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.3e-96 356.3 301 68.1
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 6.7e-96 354.8 301 67.8
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 8.8e-96 354.4 301 67.8
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 2.0e-95 353.2 302 66.9
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.3e-94 350.5 303 68.0
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.7e-94 350.1 301 66.4
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.2e-94 349.7 305 67.9
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 8.2e-94 347.8 290 69.3
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.6e-92 343.6 302 67.2
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.0e-92 343.2 304 67.1
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.0e-92 343.2 304 67.1
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 4.5e-92 342.0 301 70.1
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 5.9e-92 341.7 302 64.9
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 7.7e-92 341.3 301 65.4
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 7.7e-92 341.3 302 66.9
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 1.0e-91 340.9 301 65.1
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 2.2e-91 339.7 301 63.8
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 2.9e-91 339.3 302 64.6
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 3.8e-91 339.0 303 67.7
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 3.8e-91 339.0 302 65.2
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 3.8e-91 339.0 328 65.5
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.1e-90 337.4 301 64.1
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 7.2e-90 334.7 268 71.3
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.2e-89 334.0 308 64.0
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 2.1e-89 333.2 303 64.7
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 3.6e-89 332.4 302 64.6
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 3.6e-89 332.4 307 64.2
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 1.0e-88 330.9 319 61.1
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 1.0e-88 330.9 303 64.0
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 3.0e-88 329.3 302 63.9
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.0e-88 328.9 337 60.5
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 1.5e-87 327.0 303 62.4
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 3.3e-87 325.9 261 71.3
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 4.4e-87 325.5 302 63.6
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 4.4e-87 325.5 302 63.6
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.3e-86 323.9 304 63.2
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.3e-86 323.9 367 57.8
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 2.8e-86 322.8 304 63.5
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 2.8e-86 322.8 304 63.2
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.8e-86 322.8 304 62.8
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.8e-86 322.8 304 62.8
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.1e-85 320.9 305 64.6
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.4e-85 320.5 302 63.9
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 2.4e-85 319.7 303 62.4
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 2.4e-85 319.7 263 67.7
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 9.1e-85 317.8 333 59.5
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.6e-84 317.0 302 62.9
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.7e-84 316.2 305 61.3
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 3.5e-84 315.8 312 60.6
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 4.5e-84 315.5 302 62.9
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 5.9e-84 315.1 304 61.5
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 3.8e-83 312.4 305 63.3
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 6.5e-83 311.6 303 60.1
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 8.5e-83 311.2 302 59.6
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 8.5e-83 311.2 303 63.7
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 2.5e-82 309.7 306 60.1
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 4.2e-82 308.9 302 63.9
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 1.6e-81 307.0 304 62.8
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 3.6e-81 305.8 303 60.4
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 4.7e-81 305.4 310 61.0
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 8.0e-81 304.7 301 59.5
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 8.8e-80 301.2 305 62.3
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 4.4e-79 298.9 251 65.3
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 5.7e-79 298.5 301 60.1
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 9.8e-79 297.7 301 60.1
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 9.8e-79 297.7 301 61.1
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.3e-78 297.4 259 62.9
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.8e-78 296.2 301 61.1
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 2.8e-78 296.2 251 64.9
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.4e-77 293.9 268 62.7
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 4.1e-77 292.4 310 59.0
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.3e-75 286.6 265 62.6
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 2.3e-75 286.6 302 59.3
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 2.9e-75 286.2 294 60.2
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 3.3e-74 282.7 393 48.9
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.1e-73 280.0 259 61.0
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 3.6e-73 279.3 251 62.9
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.7e-73 278.9 303 56.8
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 8.0e-73 278.1 396 49.5
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 3.0e-72 276.2 377 50.4
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.5e-71 273.9 228 68.9
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.7e-70 270.4 308 58.4
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 9.2e-69 264.6 206 74.8
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 5.9e-68 261.9 306 56.2
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 2.8e-65 253.1 303 57.1
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.2e-63 247.7 304 55.3
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.5e-63 247.3 221 66.1
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.7e-62 243.8 249 55.4
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 5.4e-61 238.8 314 53.8
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 7.0e-61 238.4 238 60.1
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 1.1e-58 231.1 191 70.7
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.4e-56 224.2 214 63.6
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 3.9e-51 206.1 174 68.4
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.7e-49 199.1 240 47.5
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 6.2e-49 198.7 240 47.5
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 1.5e-47 194.1 287 47.7
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 1.9e-45 187.2 235 45.5
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 6.0e-44 182.2 191 61.8
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.9e-43 179.5 150 70.7
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 5.1e-43 179.1 183 60.1
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 1.1e-40 171.4 231 45.0
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.1e-36 157.1 241 37.3
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.9e-34 150.6 241 41.5
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 2.5e-34 150.2 127 64.6
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 3.6e-33 146.4 131 64.1
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 8.1e-33 145.2 187 49.7
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 5.3e-32 142.5 127 65.4
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 3.4e-31 139.8 162 52.5
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.8e-25 120.2 233 35.2
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 5.3e-24 115.9 82 78.0
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 4.9e-22 109.4 174 42.5
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 1.4e-21 107.8 130 52.3
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.4e-21 107.1 118 51.7
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 6.0e-20 102.4 105 59.0
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 3.7e-17 93.2 105 51.4
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 3.7e-17 93.2 105 51.4
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 2.0e-15 87.4 105 49.5
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 4.6e-12 76.3 62 66.1
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 4.3e-10 69.7 246 27.6
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 6.9e-08 62.4 166 32.5
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 9.0e-08 62.0 50 64.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 9.0e-08 62.0 50 64.0
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 9.0e-08 62.0 50 64.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 9.0e-08 62.0 50 64.0


User provided reference genes

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