Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.7e-155 552.7 297 100.0
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 3.9e-120 435.3 342 75.1
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.8e-53 213.8 297 45.8
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 6.1e-49 198.7 304 48.0
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.3e-48 196.8 255 47.5
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 6.7e-48 195.3 188 55.9
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 2.2e-46 190.3 253 45.5
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 2.2e-46 190.3 188 52.1
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 8.2e-46 188.3 264 44.3
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 8.2e-46 188.3 283 47.7
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 2.4e-45 186.8 268 42.5
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 7.0e-45 185.3 252 51.2
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 9.1e-45 184.9 285 42.1
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 2.6e-44 183.3 188 51.6
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 2.6e-44 183.3 252 46.8
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 3.5e-44 183.0 264 42.0
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 3.5e-44 183.0 183 53.6
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 7.7e-44 181.8 262 47.3
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 5.0e-43 179.1 255 44.7
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 2.5e-42 176.8 263 48.7
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 3.2e-42 176.4 189 52.9
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 5.5e-42 175.6 247 46.2
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 7.2e-42 175.3 285 40.7
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 1.6e-41 174.1 263 43.7
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 2.7e-41 173.3 189 51.3
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 3.6e-41 172.9 173 53.8
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 4.7e-41 172.6 266 44.7
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 6.1e-41 172.2 266 45.5
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.0e-41 171.8 263 43.7
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.4e-40 171.0 266 45.1
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.4e-40 171.0 247 44.9
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.4e-40 171.0 298 38.9
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.4e-40 171.0 302 37.7
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.8e-40 170.6 264 47.7
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 8.8e-40 168.3 298 40.6
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 2.6e-39 166.8 294 38.4
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 7.5e-39 165.2 194 49.5
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 3.7e-38 162.9 256 42.2
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 6.3e-38 162.2 306 38.2
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 8.3e-38 161.8 260 40.4
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 4.1e-37 159.5 282 38.3
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 1.2e-36 157.9 298 44.3
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.2e-35 153.7 192 46.4
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 3.8e-35 152.9 251 38.6
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 8.5e-35 151.8 191 45.0
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 8.5e-35 151.8 261 39.5
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 2.5e-34 150.2 184 44.6
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 2.1e-33 147.1 177 49.2
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 4.7e-33 146.0 267 44.9
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 8.0e-33 145.2 252 38.5
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 8.0e-33 145.2 281 42.3
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.0e-32 144.8 325 33.8
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 4.8e-30 136.0 186 43.5
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.3e-30 135.6 247 38.5
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.3e-30 135.6 247 38.5
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 1.4e-29 134.4 193 40.4
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.4e-29 134.4 185 43.2
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.8e-29 134.0 298 34.9
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.4e-29 132.5 306 32.7
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 7.0e-29 132.1 252 37.7
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 1.2e-28 131.3 183 44.3
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 2.0e-28 130.6 188 40.4
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 5.9e-28 129.0 183 40.4
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.0e-27 128.3 190 42.6
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.0e-27 128.3 190 42.6
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.7e-27 127.5 187 41.7
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 5.0e-27 125.9 292 35.3
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.1e-26 124.8 262 34.7
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.5e-26 124.4 198 38.9
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.5e-26 124.4 304 35.2
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 3.3e-26 123.2 291 34.7
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.2e-26 122.9 294 31.3
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 5.5e-26 122.5 179 40.2
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 9.5e-26 121.7 306 33.3
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 9.5e-26 121.7 195 42.6
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.6e-25 120.9 181 43.1
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 1.6e-25 120.9 188 41.5
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 2.8e-25 120.2 196 40.3
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.8e-25 120.2 190 35.3
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.6e-25 119.8 267 28.8
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.0e-24 118.2 256 38.7
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 3.0e-24 116.7 295 38.0
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 4.0e-24 116.3 153 45.8
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 4.0e-24 116.3 220 34.1
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 1.2e-23 114.8 153 46.4
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 1.2e-23 114.8 176 39.8
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.5e-23 114.4 189 40.7
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 3.4e-23 113.2 188 39.4
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 3.4e-23 113.2 338 34.6
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 5.7e-23 112.5 195 37.9
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 1.3e-22 111.3 178 42.1
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 1.7e-22 110.9 194 36.1
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.2e-22 110.5 191 35.1
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 2.2e-22 110.5 315 30.8
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 2.8e-22 110.2 191 37.2
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 2.8e-22 110.2 183 37.2
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 6.3e-22 109.0 263 32.3
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 3.2e-21 106.7 187 38.5
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.1e-21 106.3 183 39.9
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 1.2e-20 104.8 217 33.2
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 4.5e-20 102.8 303 31.7
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 7.8e-20 102.1 192 38.0
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 1.3e-19 101.3 188 36.2
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 5.0e-19 99.4 179 38.5
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 6.6e-19 99.0 188 36.7
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 6.6e-19 99.0 180 36.1
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.1e-18 98.2 193 36.8
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.1e-18 98.2 196 34.7
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 2.5e-18 97.1 149 38.9
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 4.3e-18 96.3 180 40.6
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 5.6e-18 95.9 173 35.8
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 7.3e-18 95.5 183 31.7
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 7.3e-18 95.5 265 29.1
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 9.5e-18 95.1 172 36.0
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 9.5e-18 95.1 271 36.5
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 2.1e-17 94.0 192 35.4
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 3.6e-17 93.2 194 32.5
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.7e-17 92.8 128 43.8
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.4e-16 91.3 147 35.4
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 2.3e-16 90.5 141 34.8
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 8.9e-16 88.6 183 35.0
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.2e-15 88.2 172 35.5
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 2.0e-15 87.4 189 31.7
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 2.0e-15 87.4 172 33.7
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 3.4e-15 86.7 187 34.8
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 4.4e-15 86.3 151 38.4
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 4.4e-15 86.3 113 44.2
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 5.8e-15 85.9 190 33.7
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 1.3e-14 84.7 276 34.1
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 1.3e-14 84.7 147 33.3
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.7e-14 84.3 186 34.4
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.7e-14 84.3 186 33.3
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.2e-14 84.0 179 33.5
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 2.9e-14 83.6 172 33.7
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.7e-14 83.2 276 33.3
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 6.4e-14 82.4 172 33.7
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 6.4e-14 82.4 191 32.5
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 8.3e-14 82.0 172 34.3
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 8.3e-14 82.0 179 33.5
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.9e-13 80.9 171 32.7
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 2.4e-13 80.5 187 32.6
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 3.2e-13 80.1 178 33.7
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 3.2e-13 80.1 138 37.7
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 5.4e-13 79.3 176 34.1
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 7.0e-13 79.0 177 33.3
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 7.0e-13 79.0 177 33.3
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 1.2e-12 78.2 204 32.8
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 3.0e-11 73.6 180 31.1
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 8.6e-11 72.0 197 28.9
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 9.5e-10 68.6 166 32.5
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 3.1e-08 63.5 165 32.1
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 1.7e-06 57.8 126 30.2
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 6.4e-06 55.8 247 26.7


User provided reference genes

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