Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 8.1e-118 427.2 229 100.0
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 8.7e-96 354.0 230 85.7
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 6.9e-85 317.8 246 74.4
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 2.0e-79 299.7 232 74.1
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 3.0e-72 275.8 233 70.8
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 2.0e-60 236.5 235 63.8
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 4.0e-56 222.2 235 58.3
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 5.7e-55 218.4 220 58.6
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 1.3e-54 217.2 228 57.0
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 2.4e-53 213.0 214 58.4
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 4.1e-53 212.2 209 59.3
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 1.6e-52 210.3 203 63.1
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 3.5e-52 209.1 203 62.6
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 1.7e-51 206.8 249 53.0
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 2.9e-51 206.1 200 60.0
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 8.6e-51 204.5 227 53.3
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.1e-50 204.1 209 58.4
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.8e-49 199.5 211 57.3
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.3e-48 196.4 214 59.8
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 3.0e-48 196.1 242 52.1
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 4.0e-48 195.7 200 57.5
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 4.0e-48 195.7 236 55.5
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 5.2e-48 195.3 214 59.3
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 6.8e-48 194.9 209 55.5
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 8.9e-48 194.5 215 59.1
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.2e-47 194.1 204 58.3
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 1.2e-47 194.1 218 54.1
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.5e-47 193.7 215 59.1
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 4.4e-47 192.2 209 57.4
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 4.4e-47 192.2 214 59.3
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 7.5e-47 191.4 216 52.8
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 9.8e-47 191.0 197 58.4
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 3.7e-46 189.1 229 55.0
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 1.8e-45 186.8 202 53.0
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 1.8e-45 186.8 214 53.3
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 9.2e-45 184.5 203 53.7
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 2.7e-44 183.0 217 53.0
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 4.5e-44 182.2 235 48.9
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 5.9e-44 181.8 225 51.6
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 2.9e-43 179.5 180 58.3
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 3.9e-43 179.1 209 51.7
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 3.3e-42 176.0 210 51.0
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 7.3e-42 174.9 193 52.8
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 2.8e-41 172.9 199 49.2
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 3.6e-41 172.6 202 54.0
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 6.1e-41 171.8 181 58.6
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 3.1e-40 169.5 216 50.0
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 5.2e-40 168.7 207 50.7
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 1.7e-38 163.7 224 49.6
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 2.2e-38 163.3 181 55.8
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 3.7e-38 162.5 208 51.0
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 8.3e-38 161.4 224 49.6
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 1.9e-37 160.2 212 49.5
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 1.9e-37 160.2 215 47.4
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 2.4e-37 159.8 193 49.7
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 3.2e-37 159.5 212 48.1
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 5.4e-37 158.7 251 45.0
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 5.4e-37 158.7 209 48.8
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 5.4e-37 158.7 215 49.3
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 9.2e-37 157.9 213 47.9
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 9.2e-37 157.9 210 45.7
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.2e-36 157.5 237 43.5
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 4.6e-36 155.6 203 48.8
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 7.8e-36 154.8 203 48.3
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 1.0e-35 154.5 214 43.0
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.3e-35 154.1 193 51.8
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 2.3e-35 153.3 210 47.1
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.0e-35 152.9 209 45.5
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 6.6e-35 151.8 207 48.3
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 1.1e-34 151.0 205 44.9
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 1.5e-34 150.6 205 46.8
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.3e-34 149.4 209 44.0
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 5.6e-34 148.7 223 45.7
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 7.3e-34 148.3 177 53.7
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 9.5e-34 147.9 236 41.9
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 4.7e-33 145.6 210 46.2
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 6.2e-33 145.2 212 46.7
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 6.8e-32 141.7 223 43.9
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 1.2e-31 141.0 240 41.7
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 4.4e-31 139.0 188 48.9
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 4.4e-31 139.0 241 41.5
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 3.2e-29 132.9 217 42.9
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 4.6e-28 129.0 173 49.7
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 6.0e-28 128.6 223 41.3
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 3.0e-27 126.3 223 43.5
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 1.1e-26 124.4 131 58.8
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 5.6e-26 122.1 211 44.1
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 9.5e-26 121.3 166 48.2
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 9.5e-26 121.3 188 44.1
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 2.3e-24 116.7 215 40.9
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 7.6e-23 111.7 98 64.3
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 2.9e-22 109.8 204 41.2
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 1.4e-21 107.5 217 37.8
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.9e-21 107.1 156 47.4
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.4e-21 106.7 205 38.0
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 7.1e-21 105.1 191 39.8
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 7.1e-21 105.1 165 42.4
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 9.2e-21 104.8 191 40.3
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 9.2e-21 104.8 191 40.3
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 9.2e-21 104.8 196 39.8
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 1.6e-20 104.0 196 40.3
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 1.6e-20 104.0 220 37.3
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 2.1e-20 103.6 217 37.3
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 2.1e-20 103.6 217 37.3
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 2.1e-20 103.6 217 37.3
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 2.7e-20 103.2 191 39.3
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 3.5e-20 102.8 191 40.3
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 7.8e-20 101.7 115 50.4
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 7.8e-20 101.7 205 37.6
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.0e-19 101.3 172 41.3
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 6.6e-19 98.6 191 40.3
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.9e-18 97.1 198 38.9
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 5.6e-18 95.5 187 39.6
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 7.3e-18 95.1 91 58.2
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.6e-17 94.0 183 36.6
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 2.8e-17 93.2 202 33.7
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 3.6e-17 92.8 175 37.1
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 3.6e-17 92.8 202 35.1
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 6.2e-17 92.0 194 38.1
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 2.4e-16 90.1 122 44.3
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 5.2e-16 89.0 101 50.5
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.0e-15 87.0 113 43.4
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.0e-15 87.0 218 33.9
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 2.6e-15 86.7 197 35.0
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 9.9e-15 84.7 113 45.1
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.2e-13 79.3 136 40.4
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 2.1e-12 77.0 154 38.3
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.7e-12 76.6 219 30.6
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.3e-11 73.6 130 37.7
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 1.8e-08 63.9 112 38.4
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 7.6e-07 58.5 138 36.2


User provided reference genes

Program Settings