Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G056000 Populus trichocarpa HOM05D000825 ORTHO05D003684 2.3e-51 205.3 106 100.0
Sabra08G0136400 Salix brachista HOM05D000825 ORTHO05D003462 2.6e-18 95.5 94 63.8
Potri.008G178800 Populus trichocarpa HOM05D000825 ORTHO05D003684 3.4e-18 95.1 94 64.9
Thecc.02G274000 Theobroma cacao HOM05D000825 ORTHO05D003684 7.1e-16 87.4 86 58.1
Manes.12G015000 Manihot esculenta HOM05D000825 ORTHO05D003684 2.1e-15 85.9 89 60.7
TWI36G0189 Tripterygium wilfordii HOM05D000825 ORTHO05D003684 3.5e-15 85.1 92 55.4
Manes.12G015100 Manihot esculenta HOM05D000825 ORTHO05D003684 6.0e-15 84.3 94 54.3
RcHm_v2.0_Chr4g0431211 Rosa chinensis HOM05D000825 ORTHO05D003684 7.8e-15 84.0 94 55.3
Duzib268G1792 Durio zibethinus HOM05D000825 ORTHO05D003684 1.7e-14 82.8 94 56.4
Gohir.D04G181500 Gossypium hirsutum HOM05D000825 ORTHO05D003684 1.1e-13 80.1 93 51.6
Prupe.1G233600 Prunus persica HOM05D000825 ORTHO05D003684 3.3e-13 78.6 91 52.7
Gorai.012G174800 Gossypium raimondii HOM05D000825 ORTHO05D003684 4.3e-13 78.2 94 50.0
CiPaw.05G115700 Carya illinoinensis HOM05D000825 ORTHO05D003684 9.5e-13 77.0 86 53.5
Duzib251G0166 Durio zibethinus HOM05D000825 ORTHO05D003684 9.5e-13 77.0 88 54.5
Gohir.A04G138600 Gossypium hirsutum HOM05D000825 ORTHO05D003684 9.5e-13 77.0 94 50.0
MD13G1111900 Malus domestica HOM05D000825 ORTHO05D003684 2.8e-12 75.5 91 51.6
MD16G1111500 Malus domestica HOM05D000825 ORTHO05D003684 3.6e-12 75.1 91 52.7
MBI11_g21376_MAGBIO Magnolia biondii HOM05D000825 ORTHO05D003684 4.7e-12 74.7 83 51.8
TAR374G0756 Trochodendron aralioides HOM05D000825 ORTHO05D003684 8.1e-12 73.9 86 50.0
AT5G14285 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 1.1e-11 73.6 89 49.4
GSVIVG01001837001 Vitis vinifera HOM05D000825 ORTHO05D003684 1.1e-11 73.6 86 51.2
FvH4_4g24350 Fragaria vesca HOM05D000825 ORTHO05D003684 1.4e-11 73.2 94 47.9
FAN12G2056 Fragaria x ananassa HOM05D000825 ORTHO05D003684 1.4e-11 73.2 94 47.9
CiPaw.04G034000 Carya illinoinensis HOM05D000825 ORTHO05D003684 1.8e-11 72.8 88 46.6
FAN17G0127 Fragaria x ananassa HOM05D000825 ORTHO05D003462 1.8e-11 72.8 94 47.9
MD17G1016700 Malus domestica HOM05D000825 ORTHO05D003684 2.3e-11 72.4 89 47.2
Nn4g22416 Nelumbo nucifera HOM05D000825 ORTHO05D003684 3.1e-11 72.0 81 46.9
QL03p054799 Quercus lobata HOM05D000825 ORTHO05D003684 3.1e-11 72.0 81 50.6
Ciclev10016456m.g Citrus clementina HOM05D000825 ORTHO05D003684 4.0e-11 71.6 83 48.2
FAN22G1830 Fragaria x ananassa HOM05D000825 ORTHO05D003462 4.0e-11 71.6 94 47.9
CiPaw.03G051400 Carya illinoinensis HOM05D000825 ORTHO05D003684 5.2e-11 71.2 88 47.7
FAN07G2829 Fragaria x ananassa HOM05D000825 ORTHO05D003462 5.2e-11 71.2 94 47.9
AL6G24965 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 6.8e-11 70.9 83 48.2
MD09G1016200 Malus domestica HOM05D000825 ORTHO05D003684 6.8e-11 70.9 86 47.7
ClCG11G013900 Citrullus lanatus HOM05D000825 ORTHO05D003684 8.9e-11 70.5 84 53.6
Ciclev10032558m.g Citrus clementina HOM05D000825 ORTHO05D003684 8.9e-11 70.5 80 51.2
Prupe.3G301200 Prunus persica HOM05D000825 ORTHO05D003684 8.9e-11 70.5 86 47.7
Sed0006825 Sechium edule HOM05D000825 ORTHO05D003684 1.2e-10 70.1 90 47.8
HanXRQChr09g0255951 Helianthus annuus HOM05D000825 ORTHO05D003684 1.5e-10 69.7 83 50.6
Sp6g29750 Schrenkiella parvula HOM05D000825 ORTHO05D003684 1.5e-10 69.7 89 46.1
CsaV3_5G030510 Cucumis sativus L. HOM05D000825 ORTHO05D003684 3.4e-10 68.6 80 52.5
Nn3g16547 Nelumbo nucifera HOM05D000825 ORTHO05D003684 4.4e-10 68.2 78 48.7
RcHm_v2.0_Chr2g0174621 Rosa chinensis HOM05D000825 ORTHO05D003684 4.4e-10 68.2 98 48.0
Atru.chr6.2498 Acer truncatum HOM05D000825 ORTHO05D003684 7.6e-10 67.4 85 48.2
Actinidia25758 Actinidia chinensis HOM05D000825 ORTHO05D003684 7.6e-10 67.4 86 51.2
MSTRG.525 Avicennia marina HOM05D000825 ORTHO05D003684 7.6e-10 67.4 96 42.7
Rhsim12G0105600 Rhododendron simsii HOM05D000825 ORTHO05D003684 7.6e-10 67.4 92 45.7
BcaB08g36972 Brassica carinata HOM05D000825 ORTHO05D003684 9.9e-10 67.0 87 46.0
CANSAT01G0340 Cannabis sativa HOM05D000825 ORTHO05D003684 9.9e-10 67.0 94 45.7
Lsat_1_v5_gn_0_8520 Lactuca sativa HOM05D000825 ORTHO05D003684 9.9e-10 67.0 92 44.6
HanXRQChr15g0474691 Helianthus annuus HOM05D000825 ORTHO05D003684 1.3e-09 66.6 89 43.8
QL02p072697 Quercus lobata HOM05D000825 ORTHO05D003684 1.3e-09 66.6 80 43.8
TWI36G0924 Tripterygium wilfordii HOM05D000825 ORTHO05D003684 1.3e-09 66.6 83 47.0
Cc07_g00510 Coffea canephora HOM05D000825 ORTHO05D003684 1.7e-09 66.2 94 44.7
MELO3C011890.2 Cucumis melo HOM05D000825 ORTHO05D003684 1.7e-09 66.2 80 51.2
A10p24210 Brassica napus HOM05D000825 ORTHO05D003684 2.2e-09 65.9 86 45.3
C09p62900 Brassica napus HOM05D000825 ORTHO05D003684 2.9e-09 65.5 86 44.2
BolC9t59127H Brassica oleracea HOM05D000825 ORTHO05D003684 2.9e-09 65.5 86 44.2
PSO063G4496 Papaver somniferum HOM05D000825 ORTHO05D003684 2.9e-09 65.5 81 45.7
PSO782G3128 Papaver somniferum HOM05D000825 ORTHO05D003684 2.9e-09 65.5 81 45.7
Cfa007265 Carpinus fangiana HOM05D000825 ORTHO05D003684 3.8e-09 65.1 83 43.4
Aa31LG11G15070 Aethionema arabicum HOM05D000825 ORTHO05D003684 6.4e-09 64.3 89 43.8
Rhsim10G0010000 Rhododendron simsii HOM05D000825 ORTHO05D003684 6.4e-09 64.3 86 45.3
Thhalv10014472m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 8.4e-09 63.9 89 44.9
FvH4_6g52910 Fragaria vesca HOM05D000825 ORTHO05D003684 8.4e-09 63.9 86 47.7
TPR.G6761 Trifolium pratense HOM05D000825 ORTHO05D003684 8.4e-09 63.9 91 42.9
Haze_14823 Corylus avellana HOM05D000825 ORTHO05D003684 1.1e-08 63.5 83 44.6
Lsat_1_v5_gn_4_185580 Lactuca sativa HOM05D000825 ORTHO05D003684 1.1e-08 63.5 93 44.1
PGR142G0599 Punica granatum HOM05D000825 ORTHO05D003684 1.1e-08 63.5 86 45.3
MSTRG.7978 Avicennia marina HOM05D000825 ORTHO05D003684 1.4e-08 63.2 79 43.0
MELO3C014858.2 Cucumis melo HOM05D000825 ORTHO05D003684 1.4e-08 63.2 83 45.8
Migut.H00018 Erythranthe guttata HOM05D000825 ORTHO05D003684 1.4e-08 63.2 83 47.0
FAN02G3782 Fragaria x ananassa HOM05D000825 ORTHO05D003684 1.4e-08 63.2 86 46.5
FAN05G0249 Fragaria x ananassa HOM05D000825 ORTHO05D003684 1.4e-08 63.2 86 46.5
Hma1.2p1_0279F.1_g112350 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.9e-08 62.8 86 47.7
Phvul.004G056600 Phaseolus vulgaris HOM05D000825 ORTHO05D003684 1.9e-08 62.8 77 48.1
Sed0016345 Sechium edule HOM05D000825 ORTHO05D003684 1.9e-08 62.8 83 44.6
DCAR_026481 Daucus carota HOM05D000825 ORTHO05D003684 2.4e-08 62.4 81 45.7
CsaV3_3G027280 Cucumis sativus L. HOM05D000825 ORTHO05D003684 3.2e-08 62.0 83 45.8
FAN09G3672 Fragaria x ananassa HOM05D000336 ORTHO05D002301 3.2e-08 62.0 86 45.3
Gohir.D09G034300 Gossypium hirsutum HOM05D000825 ORTHO05D003684 3.2e-08 62.0 91 42.9
Oeu050428.1 Olea europaea HOM05D000825 ORTHO05D003684 3.2e-08 62.0 89 43.8
VMungo0464G1017 Vigna mungo HOM05D000825 ORTHO05D003684 3.2e-08 62.0 77 46.8
Nitab4.5_0000040g0460 Nicotiana tabacum HOM05D000825 ORTHO05D003684 4.1e-08 61.6 96 43.8
SGA_v2.0_scaffold135G34960 Striga asiatica HOM05D000825 ORTHO05D003684 4.1e-08 61.6 83 47.0
Actinidia33260 Actinidia chinensis HOM05D000825 ORTHO05D003684 7.1e-08 60.8 77 44.2
CSS0004617 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 7.1e-08 60.8 96 40.6
COL.COLO4_29293 Corchorus olitorius HOM05D000825 ORTHO05D003684 7.1e-08 60.8 72 45.8
Duzib268G0015 Durio zibethinus HOM05D000825 ORTHO05D003684 7.1e-08 60.8 94 45.7
Manes.15G157200 Manihot esculenta HOM05D000825 ORTHO05D003684 7.1e-08 60.8 94 41.5
Thhalv10004816m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 9.2e-08 60.5 87 44.8
Nitab4.5_0008789g0010 Nicotiana tabacum HOM05D000825 ORTHO05D003684 1.2e-07 60.1 96 42.7
PGR083G2872 Punica granatum HOM05D000825 ORTHO05D003684 1.2e-07 60.1 80 43.8
BcaC06g31101 Brassica carinata HOM05D000825 ORTHO05D003684 2.1e-07 59.3 83 47.0
Migut.B01080 Erythranthe guttata HOM05D000825 ORTHO05D003684 2.1e-07 59.3 93 39.8
Atru.chr11.2257 Acer truncatum HOM05D000825 ORTHO05D003684 2.7e-07 58.9 84 42.9
Nitab4.5_0000240g0050 Nicotiana tabacum HOM05D000825 ORTHO05D003684 2.7e-07 58.9 86 40.7
Peaxi162Scf00080g00187 Petunia axillaris HOM05D000825 ORTHO05D003684 2.7e-07 58.9 96 40.6
Lj7A607G33 Lonicera japonica HOM05D000825 ORTHO05D003684 3.5e-07 58.5 86 43.0
Lalb_Chr24g0403391 Lupinus albus HOM05D000825 ORTHO05D003684 3.5e-07 58.5 84 41.7
SalBow1G2383 Salvia bowleyana HOM05D000825 ORTHO05D003684 3.5e-07 58.5 83 47.0
unitig_22.g6414 Utricularia gibba HOM05D000825 ORTHO05D003684 4.6e-07 58.2 90 41.1
Atru.chr11.2242 Acer truncatum HOM05D000825 ORTHO05D003684 6.0e-07 57.8 87 40.2
BraA06t27149Z Brassica rapa HOM05D000825 ORTHO05D003684 6.0e-07 57.8 83 45.8
BraA10t44486Z Brassica rapa HOM05D000825 ORTHO05D003684 6.0e-07 57.8 87 42.5
HanXRQChr08g0207471 Helianthus annuus HOM05D000825 ORTHO05D003684 6.0e-07 57.8 79 39.2
Sp2g15180 Schrenkiella parvula HOM05D000825 ORTHO05D003684 7.8e-07 57.4 87 42.5
AL5G14610 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 1.0e-06 57.0 70 47.1
PGR102G1594 Punica granatum HOM05D000825 ORTHO05D003684 1.0e-06 57.0 67 46.3
CARHR146940 Cardamine hirsuta HOM05D000825 ORTHO05D003684 1.3e-06 56.6 87 43.7
AT3G25950 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 1.7e-06 56.2 78 43.6
A06p42340 Brassica napus HOM05D000825 ORTHO05D003684 1.7e-06 56.2 83 44.6
Eucgr.B03459 Eucalyptus grandis HOM05D000825 ORTHO05D003684 1.7e-06 56.2 87 44.8
Medtr8g088170 Medicago truncatula HOM05D000825 ORTHO05D003684 1.7e-06 56.2 91 41.8
Carub.0006s1248 Capsella rubella HOM05D000825 ORTHO05D003684 2.3e-06 55.8 89 39.3
ClCG05G013260 Citrullus lanatus HOM05D000825 ORTHO05D003684 2.3e-06 55.8 83 42.2
BcaC06g33935 Brassica carinata HOM05D000825 ORTHO05D003684 3.9e-06 55.1 83 42.2
Potri.001G335100 Populus trichocarpa HOM05D000825 ORTHO05D003684 3.9e-06 55.1 94 39.4
CSS0018664 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 5.1e-06 54.7 91 42.9
CSS0041807 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 5.1e-06 54.7 91 42.9
unitig_52.g17647 Utricularia gibba HOM05D000825 ORTHO05D003684 5.1e-06 54.7 81 43.2
CANSAT64G2780 Cannabis sativa HOM05D000825 ORTHO05D003684 6.6e-06 54.3 88 39.8
C07p35000 Brassica napus HOM05D000825 ORTHO05D003684 8.6e-06 53.9 83 42.2
Nitab4.5_0000581g0090 Nicotiana tabacum HOM05D000825 ORTHO05D003684 8.6e-06 53.9 83 38.6


User provided reference genes

Program Settings