Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.1e-112 409.1 208 100.0
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.8e-109 398.7 208 96.6
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 2.8e-109 398.7 208 96.6
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.7e-109 398.3 208 96.6
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.8e-109 397.9 208 96.6
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 4.8e-109 397.9 208 96.6
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 4.8e-109 397.9 208 96.6
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 6.3e-109 397.5 208 95.7
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 8.2e-109 397.1 208 95.7
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 8.2e-109 397.1 208 96.2
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.1e-108 396.7 208 95.7
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.1e-108 396.7 208 96.6
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.8e-108 396.0 208 96.2
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 4.1e-108 394.8 208 96.6
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 5.3e-108 394.4 208 95.7
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 5.3e-108 394.4 208 95.2
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.2e-107 393.3 207 94.2
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.5e-107 392.9 208 95.2
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 2.0e-107 392.5 206 95.1
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 2.0e-107 392.5 206 95.1
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 2.0e-107 392.5 208 95.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 94.7
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 94.7
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.4e-107 391.7 208 95.2
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 3.4e-107 391.7 207 95.2
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 94.7
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 94.7
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 93.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 94.7
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 2.9e-106 388.7 206 94.2
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 92.8
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 5.0e-106 387.9 208 94.2
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 93.3
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.4e-105 386.3 213 92.5
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 92.8
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.9e-105 386.0 206 93.7
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 93.3
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 2.5e-105 385.6 208 92.8
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 2.5e-105 385.6 208 92.8
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 3.2e-105 385.2 206 93.7
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 91.8
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 3.2e-105 385.2 207 92.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 93.3
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 93.3
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 9.4e-105 383.6 207 91.8
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 91.8
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 91.8
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 92.8
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 92.3
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.8
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 92.3
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 4.6e-104 381.3 206 91.7
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 6.1e-104 380.9 210 91.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.8e-103 379.4 206 92.2
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 1.8e-103 379.4 207 92.8
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 2.3e-103 379.0 206 90.3
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.0e-103 378.6 208 91.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 3.9e-103 378.3 208 90.4
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 6.7e-103 377.5 206 91.7
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 91.3
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.5e-102 376.3 206 90.3
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.9e-102 375.9 207 89.9
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.9e-102 375.9 208 93.3
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 2.5e-102 375.6 207 89.9
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 3.3e-102 375.2 208 89.9
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 7.4e-102 374.0 203 91.6
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 7.4e-102 374.0 209 90.4
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 9.7e-102 373.6 218 87.2
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.3e-101 373.2 208 88.9
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.3e-101 373.2 206 89.8
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 3.7e-101 371.7 208 89.4
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 3.7e-101 371.7 209 90.0
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 89.5
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 89.5
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 88.5
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 89.4
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 88.5
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 89.4
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 88.9
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 89.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 88.9
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.8e-100 369.4 206 89.3
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 3.1e-100 368.6 207 88.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 9.1e-100 367.1 205 89.8
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.0
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.5e-99 364.8 205 89.3
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 90.3
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 4.5e-99 364.8 208 88.5
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 88.5
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.0e-98 363.6 196 93.4
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 88.0
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 8.5e-98 360.5 208 87.0
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 84.6
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 84.1
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 4.2e-97 358.2 208 85.1
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 4.2e-97 358.2 208 87.5
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.5e-97 357.8 207 87.4
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.5e-97 357.8 207 87.4
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.1e-96 355.9 207 87.0
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.0e-94 349.4 207 85.0
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 5.7e-94 347.8 208 86.5
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 9.7e-94 347.1 178 96.1
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.3e-93 346.7 208 85.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 3.1e-92 342.0 178 94.9
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 9.1e-92 340.5 179 93.9
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.0e-90 337.0 178 94.4
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.8e-90 335.1 206 85.0
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 3.6e-88 328.6 179 89.4
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.8e-87 326.2 208 75.5
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.9e-87 325.1 210 83.8
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 6.7e-87 324.3 190 86.3
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.0e-86 322.8 177 89.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 2.8e-85 318.9 208 81.2
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 6.7e-79 297.7 167 86.8
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 8.8e-79 297.4 156 93.6
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 8.8e-79 297.4 205 75.6
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 9.7e-78 293.9 156 93.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.1e-76 290.4 207 74.9
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.6e-70 269.2 232 64.2
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 3.5e-67 258.8 206 67.5
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.7e-66 256.5 202 61.9
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 2.5e-65 252.7 203 60.6
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.2e-64 250.4 168 79.2
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 2.8e-64 249.2 200 59.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 3.0e-63 245.7 197 61.4
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.3e-58 230.3 120 93.3
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 5.0e-58 228.4 205 53.2
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 1.9e-57 226.5 133 89.5
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 6.8e-55 218.0 207 53.1
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.4e-54 215.3 151 75.5
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 7.0e-52 208.0 148 71.6
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.6e-51 206.8 207 52.7
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 4.3e-49 198.7 209 56.5
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 7.3e-49 198.0 198 48.0
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 4.4e-46 188.7 196 45.9
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 6.4e-45 184.9 231 44.6
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.0e-42 177.6 160 64.4
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 4.3e-41 172.2 98 85.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 7.3e-41 171.4 208 50.5
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.0e-34 151.0 206 47.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 8.1e-32 141.4 96 78.1
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 4.0e-31 139.0 187 38.5
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 6.8e-31 138.3 99 72.7
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 9.9e-30 134.4 74 90.5
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.4e-28 129.8 83 78.3
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 9.2e-28 127.9 135 56.3
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.6e-27 127.1 92 70.7
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 3.9e-26 122.5 60 93.3
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 6.9e-23 111.7 73 79.5
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.2e-22 110.9 82 68.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.7e-21 107.1 60 85.0
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 1.2e-14 84.3 61 67.2
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.8e-10 70.5 62 66.1
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 3.7e-08 62.8 39 71.8
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 8.1e-08 61.6 38 73.7
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.8e-07 60.5 58 65.5
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 9.9e-06 54.7 137 24.1


User provided reference genes

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