Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 0.0e+00 1177.2 588 100.0
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 0.0e+00 1122.8 602 93.5
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 6.8e-278 960.3 593 81.6
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 3.4e-277 958.0 595 81.7
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 6.6e-273 943.7 596 79.4
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 5.6e-272 940.6 590 79.5
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 9.6e-272 939.9 590 80.0
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 2.8e-271 938.3 596 78.9
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 2.4e-270 935.3 594 79.1
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 3.4e-269 931.4 595 78.3
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 7.6e-269 930.2 591 79.4
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 6.4e-268 927.2 595 78.2
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.6e-266 922.5 595 77.6
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 2.7e-266 921.8 595 77.8
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 3.5e-266 921.4 594 77.3
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 6.0e-266 920.6 595 77.0
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 1.0e-265 919.8 592 77.7
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 1.3e-265 919.5 550 82.5
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 1.3e-265 919.5 594 78.3
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 1.7e-265 919.1 594 77.8
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 8.1e-263 910.2 583 77.5
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 4.0e-262 907.9 594 77.4
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 2.6e-261 905.2 593 78.4
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 7.6e-261 903.7 594 76.4
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 1.3e-260 902.9 594 77.9
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 1.3e-260 902.9 597 75.2
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 2.9e-260 901.7 581 78.8
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 8.4e-260 900.2 594 77.4
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 2.4e-259 898.7 593 76.4
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 9.3e-259 896.7 590 76.1
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 2.7e-258 895.2 556 78.6
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 3.5e-258 894.8 598 75.4
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 1.3e-257 892.9 598 74.6
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 1.3e-257 892.9 589 76.9
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.3e-257 892.9 575 77.0
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.3e-257 892.9 598 74.7
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 1.8e-257 892.5 631 71.9
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 2.3e-257 892.1 598 74.4
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 5.1e-257 891.0 592 75.8
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 1.1e-256 889.8 597 74.9
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 1.1e-256 889.8 597 74.9
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 1.9e-256 889.0 558 78.1
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 3.3e-256 888.3 592 74.8
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 3.3e-256 888.3 588 75.2
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 4.3e-256 887.9 595 74.6
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 2.8e-255 885.2 596 74.7
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 3.7e-255 884.8 597 74.7
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.8e-255 884.4 590 76.8
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 8.1e-255 883.6 588 75.5
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 8.1e-255 883.6 588 75.2
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 1.1e-254 883.2 598 74.1
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 1.4e-254 882.9 590 74.9
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 1.8e-254 882.5 597 74.5
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 5.3e-254 880.9 602 73.3
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 5.3e-254 880.9 590 76.3
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 6.9e-254 880.6 589 76.2
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 6.9e-254 880.6 602 74.1
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 2.6e-253 878.6 597 73.4
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.5e-253 877.9 587 76.1
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 1.7e-252 875.9 594 74.1
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 1.7e-252 875.9 586 74.9
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 3.2e-251 871.7 584 75.0
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 5.5e-251 870.9 589 74.4
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 3.5e-250 868.2 550 77.1
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 6.0e-250 867.5 583 74.6
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.8e-249 865.9 620 72.9
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 5.1e-249 864.4 577 74.9
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 2.5e-248 862.1 550 76.4
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 1.6e-247 859.4 543 77.9
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 1.6e-247 859.4 586 75.1
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 4.8e-247 857.8 594 72.6
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 2.4e-246 855.5 549 77.0
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 3.1e-246 855.1 539 78.3
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 4.0e-246 854.7 542 78.2
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 2.0e-245 852.4 594 72.2
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 1.3e-244 849.7 549 76.1
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 2.2e-244 849.0 594 72.2
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 2.9e-244 848.6 611 70.5
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 3.8e-244 848.2 514 82.3
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.9e-241 838.2 623 71.3
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.8e-238 829.3 561 72.9
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 3.4e-237 825.1 513 81.7
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 5.9e-237 824.3 590 72.9
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 4.2e-235 818.1 587 70.5
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 7.2e-235 817.4 594 71.2
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 6.1e-234 814.3 594 71.9
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 3.3e-232 808.5 586 70.5
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 2.0e-229 799.3 601 69.2
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 1.0e-228 797.0 602 68.4
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 4.4e-224 781.6 519 75.1
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 4.4e-224 781.6 588 69.0
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 6.3e-223 777.7 593 67.3
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 5.3e-222 774.6 587 67.5
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 3.8e-220 768.5 462 80.7
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 1.4e-219 766.5 521 73.7
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 1.4e-219 766.5 526 72.1
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 2.2e-212 742.7 443 81.0
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 2.2e-212 742.7 593 66.9
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 5.5e-211 738.0 492 76.8
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.6e-210 736.5 501 73.9
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 8.8e-209 730.7 497 73.6
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 3.2e-203 712.2 543 67.8
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 9.8e-200 700.7 520 68.7
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 2.5e-195 686.0 538 64.1
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 6.8e-193 677.9 592 60.5
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 3.7e-191 672.2 506 66.8
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 3.4e-184 649.0 383 81.5
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 5.6e-179 631.7 508 64.2
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 3.3e-171 605.9 389 78.4
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 1.3e-164 583.9 448 63.6
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 4.3e-123 446.0 325 65.8
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 7.4e-99 365.5 253 72.3
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.7e-90 336.7 200 80.0
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-65 254.6 276 49.6
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-57 227.3 206 55.3
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 2.6e-51 207.6 143 71.3
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 8.4e-50 202.6 140 70.0
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 6.6e-39 166.4 100 76.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 4.3e-38 163.7 102 75.5
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 9.3e-33 146.0 101 66.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 7.1e-25 119.8 65 86.2
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 7.1e-25 119.8 76 75.0
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.2e-24 119.0 177 42.9
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.5e-22 112.1 66 77.3
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 2.5e-22 111.3 111 54.1
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 2.1e-21 108.2 117 52.1
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 1.0e-18 99.4 65 72.3
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 1.0e-18 99.4 65 72.3
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 1.9e-17 95.1 68 67.6
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 1.9e-17 95.1 68 67.6
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.3e-15 88.2 52 76.9
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 3.0e-15 87.8 69 60.9
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 1.5e-11 75.5 106 47.2
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.3e-06 57.8 38 65.8
CDE06G1756 Ceratophyllum demersum HOM05D005895 ORTHO05D007916 7.4e-06 56.6 32 78.1


User provided reference genes

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