Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G043601 Populus trichocarpa HOM05D005748 ORTHO05D007123 4.4e-28 127.1 58 100.0
Potri.008G188600 Populus trichocarpa HOM05D005748 ORTHO05D007123 5.2e-13 77.0 44 75.0
Sabra08G0142800 Salix brachista HOM05D005748 ORTHO05D007123 2.9e-11 71.2 44 72.7
GSVIVG01013797001 Vitis vinifera HOM05D005748 ORTHO05D007123 2.9e-11 71.2 44 70.5
TAR622G1138 Trochodendron aralioides HOM05D005748 ORTHO05D007123 8.3e-11 69.7 44 72.7
Actinidia27797 Actinidia chinensis HOM05D005748 ORTHO05D007123 1.4e-10 68.9 44 68.2
Ciclev10032509m.g Citrus clementina HOM05D005748 ORTHO05D007123 1.4e-10 68.9 44 68.2
Atru.chr11.2076 Acer truncatum HOM05D005748 ORTHO05D007123 3.2e-10 67.8 44 65.9
GSVIVG01013794001 Vitis vinifera HOM05D005748 ORTHO05D007123 3.2e-10 67.8 44 65.9
Actinidia08146 Actinidia chinensis HOM05D005748 ORTHO05D007123 5.4e-10 67.0 44 63.6
Thhalv10008293m.g Eutrema salsugineum HOM05D005748 ORTHO05D007123 5.4e-10 67.0 44 65.9
MD13G1095900 Malus domestica HOM05D005748 ORTHO05D007123 5.4e-10 67.0 44 68.2
Manes.13G027200 Manihot esculenta HOM05D005748 ORTHO05D007123 5.4e-10 67.0 44 68.2
Sp1g20810 Schrenkiella parvula HOM05D005748 ORTHO05D007123 5.4e-10 67.0 44 65.9
MD13G1096300 Malus domestica HOM05D005748 ORTHO05D007123 7.1e-10 66.6 46 63.0
Rhsim12G0042600 Rhododendron simsii HOM05D000043 ORTHO05D007123 7.1e-10 66.6 44 65.9
RhsimUnG0110900 Rhododendron simsii HOM05D005748 ORTHO05D007123 7.1e-10 66.6 44 65.9
vmacro01149 Vaccinium macrocarpon HOM05D005748 ORTHO05D007123 7.1e-10 66.6 44 65.9
ECA233G4637 Erigeron canadensis HOM05D005748 ORTHO05D007123 1.2e-09 65.9 44 61.4
Haze_12219 Corylus avellana HOM05D005748 ORTHO05D007123 1.6e-09 65.5 44 61.4
HanXRQChr12g0371641 Helianthus annuus HOM05D005748 ORTHO05D007123 1.6e-09 65.5 44 61.4
Manes.12G025500 Manihot esculenta HOM05D005748 ORTHO05D007123 2.1e-09 65.1 44 65.9
COL.COLO4_24224 Corchorus olitorius HOM05D005748 ORTHO05D007123 2.7e-09 64.7 44 65.9
Gohir.A01G160000 Gossypium hirsutum HOM05D005748 ORTHO05D007123 2.7e-09 64.7 44 65.9
Gohir.D01G150000 Gossypium hirsutum HOM05D005748 ORTHO05D007123 2.7e-09 64.7 44 65.9
Gorai.002G186100 Gossypium raimondii HOM05D005748 ORTHO05D007123 2.7e-09 64.7 44 65.9
Lsat_1_v5_gn_8_154441 Lactuca sativa HOM05D005748 ORTHO05D007123 3.5e-09 64.3 44 63.6
CSS0032355 Camellia sinensis var. sinensis HOM05D005748 ORTHO05D007123 4.6e-09 63.9 44 63.6
Carub.0001s2295 Capsella rubella HOM05D005748 ORTHO05D007123 4.6e-09 63.9 44 63.6
Prupe.1G249500 Prunus persica HOM05D005748 ORTHO05D007123 4.6e-09 63.9 44 63.6
AL1G37160 Arabidopsis lyrata HOM05D005748 ORTHO05D007123 6.0e-09 63.5 44 61.4
BcaB03g11936 Brassica carinata HOM05D005748 ORTHO05D007123 6.0e-09 63.5 44 61.4
BcaC07g39197 Brassica carinata HOM05D005748 ORTHO05D007123 6.0e-09 63.5 44 61.4
C08p21870 Brassica napus HOM05D005748 ORTHO05D007123 6.0e-09 63.5 44 61.4
BolC8t49826H Brassica oleracea HOM05D005748 ORTHO05D007123 6.0e-09 63.5 44 61.4
DCAR_021512 Daucus carota HOM05D005748 ORTHO05D007123 6.0e-09 63.5 44 65.9
Duzib248G1559 Durio zibethinus HOM05D005748 ORTHO05D007123 7.8e-09 63.2 44 63.6
Dinv15258 Davidia involucrata HOM05D005748 ORTHO05D007123 1.0e-08 62.8 44 63.6
A08p28200 Brassica napus HOM05D005748 ORTHO05D007123 1.3e-08 62.4 44 59.1
BraA08t34751Z Brassica rapa HOM05D005748 ORTHO05D007123 1.3e-08 62.4 44 59.1
CANSAT01G2054 Cannabis sativa HOM05D005748 ORTHO05D007123 1.3e-08 62.4 44 63.6
Hma1.2p1_0223F.1_g094270 Hydrangea macrophylla HOM05D005748 ORTHO05D007123 2.3e-08 61.6 44 59.1
Phvul.002G064000 Phaseolus vulgaris HOM05D005748 ORTHO05D007123 2.3e-08 61.6 44 63.6
PGR119G1070 Punica granatum HOM05D005748 ORTHO05D007123 2.3e-08 61.6 44 61.4
AT1G23360 Arabidopsis thaliana HOM05D005748 ORTHO05D007123 3.0e-08 61.2 44 56.8
VMungo1215G1762 Vigna mungo HOM05D005748 ORTHO05D007123 3.0e-08 61.2 44 63.6
CsaV3_2G024810 Cucumis sativus L. HOM05D005748 ORTHO05D007123 3.9e-08 60.8 44 61.4
Eucgr.H02539 Eucalyptus grandis HOM05D005748 ORTHO05D007123 3.9e-08 60.8 44 65.9
SGA_v2.0_scaffold87G27097 Striga asiatica HOM05D005748 ORTHO05D007123 3.9e-08 60.8 44 61.4
TWI18G0424 Tripterygium wilfordii HOM05D005748 ORTHO05D007123 3.9e-08 60.8 44 65.9
vmacro11161 Vaccinium macrocarpon HOM05D005748 ORTHO05D007123 3.9e-08 60.8 44 61.4
THA.LOC104822157 Tarenaya hassleriana HOM05D005748 ORTHO05D007123 6.6e-08 60.1 44 63.6
MSTRG.2407 Avicennia marina HOM05D005748 ORTHO05D007123 8.6e-08 59.7 44 61.4
Cpa.g.sc69.82 Carica papaya HOM05D005748 ORTHO05D007123 8.6e-08 59.7 44 61.4
Nn3g16801 Nelumbo nucifera HOM05D005748 ORTHO05D007123 8.6e-08 59.7 44 65.9
Zm00001eb426240 Zea mays HOM05D005748 ORTHO05D007123 1.1e-07 59.3 43 55.8
Lj3C1055T9 Lonicera japonica HOM05D005748 ORTHO05D007123 1.5e-07 58.9 59 52.5
MD16G1097300 Malus domestica HOM05D005748 ORTHO05D007123 1.5e-07 58.9 44 61.4
Oeu056727.1 Olea europaea HOM05D005748 ORTHO05D007123 1.5e-07 58.9 44 59.1
Peaxi162Scf00057g02525 Petunia axillaris HOM05D005748 ORTHO05D007123 1.5e-07 58.9 44 61.4
Aqoxy3G02861 Aquilegia oxysepala HOM05D005748 ORTHO05D007123 1.9e-07 58.5 44 56.8
Glyma.02G037000 Glycine max HOM05D005748 ORTHO05D007123 1.9e-07 58.5 43 62.8
CAN.G8.38 Capsicum annuum HOM05D005748 ORTHO05D007123 2.5e-07 58.2 44 59.1
MELO3C010679.2 Cucumis melo HOM05D005748 ORTHO05D007123 2.5e-07 58.2 44 59.1
PGSC0003DMG400020380 Solanum tuberosum HOM05D005748 ORTHO05D007123 2.5e-07 58.2 44 59.1
FvH4_4g26080 Fragaria vesca HOM05D005748 ORTHO05D007123 3.3e-07 57.8 44 61.4
FAN07G1722 Fragaria x ananassa HOM05D005748 ORTHO05D007123 3.3e-07 57.8 44 61.4
FAN12G3013 Fragaria x ananassa HOM05D005748 ORTHO05D007123 3.3e-07 57.8 44 61.4
FAN17G1434 Fragaria x ananassa HOM05D005748 ORTHO05D007123 3.3e-07 57.8 44 61.4
CiPaw.06G069600 Carya illinoinensis HOM05D005748 ORTHO05D007123 4.3e-07 57.4 44 56.8
QL03p058965 Quercus lobata HOM05D005748 ORTHO05D007123 5.6e-07 57.0 44 59.1
unitig_22.g5531 Utricularia gibba HOM05D005748 ORTHO05D007123 5.6e-07 57.0 44 56.8
Cc11_g15440 Coffea canephora HOM05D005748 ORTHO05D007123 7.3e-07 56.6 44 54.5
Lalb_Chr16g0382091 Lupinus albus HOM05D005748 ORTHO05D007123 7.3e-07 56.6 44 56.8
RcHm_v2.0_Chr4g0433541 Rosa chinensis HOM05D005748 ORTHO05D007123 7.3e-07 56.6 44 59.1
Sed0017321 Sechium edule HOM05D005748 ORTHO05D007123 7.3e-07 56.6 44 59.1
Solyc12g019010.2 Solanum lycopersicum HOM05D005748 ORTHO05D007123 7.3e-07 56.6 44 56.8
Sopen12g009240 Solanum pennellii HOM05D005748 ORTHO05D007123 7.3e-07 56.6 44 56.8
Thecc.02G255300 Theobroma cacao HOM05D005748 ORTHO05D007123 7.3e-07 56.6 44 56.8
FvH4_4g26060 Fragaria vesca HOM05D005748 ORTHO05D007123 9.5e-07 56.2 44 59.1
FAN07G0627 Fragaria x ananassa HOM05D005748 ORTHO05D007123 9.5e-07 56.2 44 59.1
FAN12G4111 Fragaria x ananassa HOM05D005748 ORTHO05D007123 9.5e-07 56.2 44 59.1
FAN22G2132 Fragaria x ananassa HOM05D005748 ORTHO05D007123 9.5e-07 56.2 44 59.1
Glyma.01G028200 Glycine max HOM05D005748 ORTHO05D007123 9.5e-07 56.2 43 60.5
Nitab4.5_0000160g0130 Nicotiana tabacum HOM05D005748 ORTHO05D007123 9.5e-07 56.2 43 58.1
Nitab4.5_0003520g0030 Nicotiana tabacum HOM05D005748 ORTHO05D007123 9.5e-07 56.2 43 58.1
EL10Ac6g13715 Beta vulgaris HOM05D005748 ORTHO05D007123 1.2e-06 55.8 44 56.8
Lj2g0027284 Lotus japonicus HOM05D005748 ORTHO05D007123 1.6e-06 55.5 44 56.8
Aa31LG7G7390 Aethionema arabicum HOM05D005748 ORTHO05D007123 2.8e-06 54.7 44 56.8
ClCG08G017810 Citrullus lanatus HOM05D005748 ORTHO05D007123 3.6e-06 54.3 44 56.8
Migut.E00183 Erythranthe guttata HOM05D005748 ORTHO05D007123 6.2e-06 53.5 44 54.5


User provided reference genes

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