Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 1.4e-75 286.2 145 100.0
Sabra10G0025800 Salix brachista HOM05D007558 ORTHO05D009245 2.6e-29 132.5 101 71.3
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 3.5e-26 122.1 151 54.3
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 5.1e-25 118.2 167 48.5
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 8.2e-23 110.9 127 52.0
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 6.9e-22 107.8 124 58.9
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 3.4e-21 105.5 124 56.5
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 1.0e-20 104.0 127 52.0
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 1.1e-19 100.5 115 53.0
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 1.4e-19 100.1 170 48.2
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 2.5e-19 99.4 143 46.9
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 7.1e-19 97.8 130 50.0
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 7.1e-19 97.8 131 52.7
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 1.2e-18 97.1 124 53.2
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 2.7e-18 95.9 128 52.3
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.7e-18 95.9 142 49.3
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.7e-18 95.9 142 49.3
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 2.7e-18 95.9 182 44.0
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 3.5e-18 95.5 120 47.5
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 3.5e-18 95.5 138 47.1
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 7.9e-18 94.4 129 51.2
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 7.9e-18 94.4 71 70.4
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 1.3e-17 93.6 156 46.8
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.8e-17 93.2 156 46.2
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.9e-17 92.0 156 46.2
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 6.7e-17 91.3 156 46.2
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 6.7e-17 91.3 141 46.1
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.5e-16 90.1 158 44.9
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 1.9e-16 89.7 109 50.5
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 1.9e-16 89.7 141 46.1
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 4.3e-16 88.6 92 60.9
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 5.7e-16 88.2 108 54.6
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 5.7e-16 88.2 172 41.9
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 7.4e-16 87.8 129 45.0
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 7.4e-16 87.8 118 49.2
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 7.4e-16 87.8 141 44.7
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 9.7e-16 87.4 136 43.4
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 1.6e-15 86.7 113 52.2
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 2.2e-15 86.3 127 46.5
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.2e-15 86.3 131 42.0
Glyma.02G035400 Glycine max HOM05D007558 ORTHO05D009245 2.8e-15 85.9 117 42.7
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 2.8e-15 85.9 131 42.0
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 3.7e-15 85.5 137 44.5
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 8.2e-15 84.3 135 40.7
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 1.1e-14 84.0 120 46.7
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 1.1e-14 84.0 139 43.9
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 2.4e-14 82.8 110 48.2
Manes.13G029400 Manihot esculenta HOM05D007558 ORTHO05D009245 2.4e-14 82.8 154 41.6
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 3.1e-14 82.4 133 42.9
Lalb_Chr16g0382221 Lupinus albus HOM05D007558 ORTHO05D009245 5.3e-14 81.6 120 43.3
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 6.9e-14 81.3 127 41.7
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 9.0e-14 80.9 108 48.1
Atru.chr11.2043 Acer truncatum HOM05D007558 ORTHO05D009245 1.2e-13 80.5 134 43.3
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.5e-13 80.1 141 41.8
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 1.5e-13 80.1 145 42.1
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 1.5e-13 80.1 102 53.9
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 1.5e-13 80.1 114 45.6
DCAR_007085 Daucus carota HOM05D007558 ORTHO05D009245 2.0e-13 79.7 98 46.9
Sc11g0001140 Simmondsia chinensis HOM05D007558 ORTHO05D009245 2.0e-13 79.7 153 35.9
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 3.4e-13 79.0 128 43.0
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 5.9e-13 78.2 136 42.6
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 5.9e-13 78.2 123 43.9
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 7.7e-13 77.8 129 42.6
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 1.0e-12 77.4 105 49.5
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 1.0e-12 77.4 123 43.1
MBI16_g27096_MAGBIO Magnolia biondii HOM05D007558 ORTHO05D009245 1.0e-12 77.4 111 42.3
Carub.0002s1715 Capsella rubella HOM05D008527 ORTHO05D010701 1.7e-12 76.6 122 41.8
ECA233G1669 Erigeron canadensis HOM05D007558 ORTHO05D009245 1.7e-12 76.6 105 49.5
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.2e-12 76.3 136 40.4
A02p16540 Brassica napus HOM05D008527 ORTHO05D010701 2.9e-12 75.9 103 49.5
BraA02t06712Z Brassica rapa HOM05D008527 ORTHO05D010701 2.9e-12 75.9 103 49.5
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 2.9e-12 75.9 161 39.8
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 2.9e-12 75.9 144 39.6
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 2.9e-12 75.9 92 51.1
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 5.0e-12 75.1 158 40.5
BolC2t08819H Brassica oleracea HOM05D008527 ORTHO05D010701 8.5e-12 74.3 103 49.5
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 1.1e-11 73.9 126 38.9
Glyma.01G030000 Glycine max HOM05D007558 ORTHO05D009245 2.5e-11 72.8 130 41.5
VMungo0251G2708 Vigna mungo HOM05D007558 ORTHO05D009245 2.5e-11 72.8 98 48.0
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 3.2e-11 72.4 116 43.1
Aqoxy3G02932 Aquilegia oxysepala HOM05D007558 ORTHO05D009245 4.2e-11 72.0 114 41.2
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 7.2e-11 71.2 110 44.5
DCAR_026537 Daucus carota HOM05D007558 ORTHO05D009245 9.4e-11 70.9 87 49.4
PGSC0003DMG400027920 Solanum tuberosum HOM05D007558 ORTHO05D009245 9.4e-11 70.9 131 42.0
SalBow2G1747 Salvia bowleyana HOM05D007558 ORTHO05D009245 2.7e-10 69.3 78 52.6
Nitab4.5_0000034g0280 Nicotiana tabacum HOM05D007558 ORTHO05D009245 6.1e-10 68.2 130 40.0
Eucgr.B03316 Eucalyptus grandis HOM05D007558 ORTHO05D009245 7.9e-10 67.8 154 37.0
Sopen04g014760 Solanum pennellii HOM05D007558 ORTHO05D009245 1.8e-09 66.6 97 44.3
Migut.E00166 Erythranthe guttata HOM05D007558 ORTHO05D009245 2.3e-09 66.2 128 39.1
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 3.0e-09 65.9 139 38.8
Lsat_1_v5_gn_4_5541 Lactuca sativa HOM05D007558 ORTHO05D009245 3.9e-09 65.5 114 37.7
unitig_22.g6434 Utricularia gibba HOM05D007558 ORTHO05D009245 5.1e-09 65.1 122 37.7
unitig_8.g3152 Utricularia gibba HOM05D007558 ORTHO05D009245 5.1e-09 65.1 102 41.2
MSTRG.2398 Avicennia marina HOM05D007558 ORTHO05D009245 6.7e-09 64.7 124 41.1
Solyc04g026250.1 Solanum lycopersicum HOM05D007558 ORTHO05D009245 8.8e-09 64.3 96 42.7
ATR0730G210 Amborella trichopoda HOM05D022024 ORTHO05D009245 1.1e-08 63.9 89 49.4
Sp5g25540 Schrenkiella parvula HOM05D008527 ORTHO05D010701 2.0e-08 63.2 75 49.3
BcaB07g32343 Brassica carinata HOM05D008527 ORTHO05D010701 2.5e-08 62.8 119 41.2
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 2.5e-08 62.8 93 47.3
ECA234G1002 Erigeron canadensis HOM05D007558 ORTHO05D009245 2.5e-08 62.8 150 37.3
Migut.L01422 Erythranthe guttata HOM05D007558 ORTHO05D009245 4.3e-08 62.0 61 57.4
BcaC03g15190 Brassica carinata HOM05D008527 ORTHO05D010701 9.7e-08 60.8 101 43.6
C02p27710 Brassica napus HOM05D008527 ORTHO05D010701 9.7e-08 60.8 101 43.6
BcaC08g46489 Brassica carinata HOM05D008527 ORTHO05D010701 2.2e-07 59.7 76 47.4
C06p44320 Brassica napus HOM05D008527 ORTHO05D010701 2.2e-07 59.7 76 47.4
BolC6t39502H Brassica oleracea HOM05D008527 ORTHO05D010701 2.2e-07 59.7 76 47.4
unitig_8.g3942 Utricularia gibba HOM05D007558 ORTHO05D009245 2.8e-07 59.3 98 43.9
Ah.03g132750 Amaranthus hybridus HOM05D023191 ORTHO05D009245 4.8e-07 58.5 53 54.7
AL2G29840 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 8.2e-07 57.8 120 36.7
BcaB05g24574 Brassica carinata HOM05D008527 ORTHO05D010701 1.4e-06 57.0 74 50.0
BcaB05g24577 Brassica carinata HOM05D008527 ORTHO05D010701 1.4e-06 57.0 74 50.0
Rhsim12G0044500 Rhododendron simsii HOM05D007558 ORTHO05D009245 1.4e-06 57.0 145 37.9
AL1G37290 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 2.4e-06 56.2 118 38.1
EL10Ac6g13681 Beta vulgaris HOM05D023191 ORTHO05D009245 2.4e-06 56.2 84 40.5
Nitab4.5_0005678g0020 Nicotiana tabacum HOM05D020724 ORTHO05D025910 2.4e-06 56.2 130 33.8
Ah.02g129970 Amaranthus hybridus HOM05D023191 ORTHO05D009245 4.1e-06 55.5 77 44.2
AUR62014050 Chenopodium quinoa HOM05D023191 ORTHO05D009245 5.3e-06 55.1 83 38.6
A09p41140 Brassica napus HOM05D008527 ORTHO05D010701 6.9e-06 54.7 116 37.9
BraA09t39607Z Brassica rapa HOM05D008527 ORTHO05D010701 6.9e-06 54.7 116 37.9
SalBow8G4409 Salvia bowleyana HOM05D007558 ORTHO05D009245 6.9e-06 54.7 122 35.2
Nitab4.5_0000203g0180 Nicotiana tabacum HOM05D020724 ORTHO05D025910 9.1e-06 54.3 156 34.6


User provided reference genes

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