Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.3e-52 209.5 110 100.0
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 3.4e-37 158.3 99 86.9
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 8.9e-30 133.7 108 69.4
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 4.1e-19 98.2 102 56.9
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 9.2e-19 97.1 102 59.8
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 1.6e-18 96.3 110 56.4
Sabra08G0145000 Salix brachista HOM05D004965 ORTHO05D004401 5.1e-17 91.3 85 63.5
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 9.6e-16 87.0 111 51.4
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 6.2e-15 84.3 110 54.5
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 6.2e-15 84.3 107 52.3
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.8e-14 82.8 118 46.6
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 4.0e-14 81.6 94 55.3
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 5.2e-14 81.3 106 56.6
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 1.2e-13 80.1 115 47.0
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 2.0e-13 79.3 107 49.5
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 2.6e-13 79.0 99 55.6
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 3.4e-13 78.6 106 47.2
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 2.2e-12 75.9 125 45.6
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 3.8e-12 75.1 110 46.4
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 4.9e-12 74.7 107 44.9
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 4.9e-12 74.7 113 46.9
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 4.9e-12 74.7 95 53.7
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 4.9e-12 74.7 112 52.7
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.4e-12 74.3 111 47.7
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 8.4e-12 73.9 113 53.1
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 8.4e-12 73.9 115 44.3
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 8.4e-12 73.9 111 46.8
TWI75G1371 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 8.4e-12 73.9 112 47.3
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 8.4e-12 73.9 98 54.1
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 1.1e-11 73.6 137 43.1
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.1e-11 73.6 115 43.5
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 1.4e-11 73.2 113 51.3
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.9e-11 72.8 107 47.7
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 2.4e-11 72.4 115 43.5
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 3.2e-11 72.0 50 68.0
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 4.2e-11 71.6 111 48.6
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 5.4e-11 71.2 108 49.1
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 5.4e-11 71.2 110 48.2
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 7.1e-11 70.9 108 48.1
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 9.3e-11 70.5 124 42.7
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 1.6e-10 69.7 99 48.5
TWI36G1686 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.6e-10 69.7 112 43.8
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 2.1e-10 69.3 110 43.6
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.5e-10 68.6 104 47.1
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 7.8e-10 67.4 112 44.6
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 7.8e-10 67.4 97 43.3
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 1.0e-09 67.0 110 43.6
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 1.0e-09 67.0 110 42.7
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 2.3e-09 65.9 100 41.0
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 3.0e-09 65.5 105 42.9
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 3.9e-09 65.1 87 47.1
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 5.1e-09 64.7 97 47.4
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 6.6e-09 64.3 109 45.9
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.6e-09 64.3 102 43.1
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.6e-09 64.3 110 42.7
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 6.6e-09 64.3 102 48.0
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 6.6e-09 64.3 109 41.3
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 8.7e-09 63.9 98 41.8
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.1e-08 63.5 98 44.9
Sp5g25080 Schrenkiella parvula HOM05D010176 ORTHO05D012455 2.5e-08 62.4 103 41.7
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.5e-08 62.4 96 42.7
Carub.0002s1667 Capsella rubella HOM05D010176 ORTHO05D012455 4.3e-08 61.6 115 36.5
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 5.6e-08 61.2 111 41.4
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 7.3e-08 60.8 110 41.8
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 7.3e-08 60.8 114 43.0
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 7.3e-08 60.8 119 42.9
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 9.6e-08 60.5 110 42.7
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 9.6e-08 60.5 102 41.2
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 9.6e-08 60.5 98 41.8
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 9.6e-08 60.5 104 42.3
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 1.3e-07 60.1 34 88.2
CARHR063070 Cardamine hirsuta HOM05D010176 ORTHO05D012455 1.3e-07 60.1 105 41.9
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.3e-07 60.1 100 43.0
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.6e-07 59.7 99 47.5
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 1.6e-07 59.7 97 40.2
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 2.1e-07 59.3 64 53.1
AL2G29210 Arabidopsis lyrata HOM05D010176 ORTHO05D012455 2.8e-07 58.9 103 36.9
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.8e-07 58.9 99 40.4
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 2.8e-07 58.9 110 40.0
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 2.8e-07 58.9 99 41.4
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.8e-07 58.9 102 40.2
BcaB03g15521 Brassica carinata HOM05D010176 ORTHO05D012455 3.6e-07 58.5 88 45.5
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 3.6e-07 58.5 98 44.9
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.6e-07 58.5 85 47.1
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 4.8e-07 58.2 99 41.4
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 4.8e-07 58.2 100 41.0
Thhalv10019352m.g Eutrema salsugineum HOM05D010176 ORTHO05D012455 6.2e-07 57.8 113 38.9
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 1.1e-06 57.0 101 43.6
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 1.1e-06 57.0 67 49.3
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 1.1e-06 57.0 29 86.2
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 1.1e-06 57.0 51 62.7
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 1.1e-06 57.0 98 41.8
A02p16280 Brassica napus HOM05D010176 ORTHO05D012455 1.4e-06 56.6 101 40.6
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.8e-06 56.2 102 40.2
BcaC08g45847 Brassica carinata HOM05D010176 ORTHO05D012455 1.8e-06 56.2 104 41.3
PSO591G0153 Papaver somniferum HOM05D044922 ORTHO05D050178 2.4e-06 55.8 32 81.2
Sed0010056 Sechium edule HOM05D031204 ORTHO05D004401 2.4e-06 55.8 114 41.2
BcaB05g24507 Brassica carinata HOM05D010176 ORTHO05D012455 3.1e-06 55.5 34 73.5
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 3.1e-06 55.5 99 39.4
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 4.0e-06 55.1 31 83.9
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 5.3e-06 54.7 101 41.6
FAN17G0917 Fragaria x ananassa HOM05D004965 ORTHO05D004401 5.3e-06 54.7 102 39.2
BcaC03g15148 Brassica carinata HOM05D010176 ORTHO05D012455 6.9e-06 54.3 101 39.6
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 6.9e-06 54.3 55 58.2
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 6.9e-06 54.3 37 67.6
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 6.9e-06 54.3 37 67.6
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 9.0e-06 53.9 112 42.0


User provided reference genes

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